Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNA5SP496-201ENST00000391240 109 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 snoU13.18-201ENST00000459483 104 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 RNU6-635P-201ENST00000516651 102 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 RNU6-1116P-201ENST00000517269 99 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 MIR5692C2-201ENST00000577959 77 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 SNORA4-201ENST00000584302 138 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 AC008737.2-201ENST00000599446 118 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 JPX_2.1-201ENST00000614161 69 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 RNU6-1205P-201ENST00000363625 106 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.275-201ENST00000364726 110 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 SNORD50B-201ENST00000364995 70 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 SNORD41-201ENST00000386967 70 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 MIR526A2-201ENST00000390198 65 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 RNU6-1054P-201ENST00000411293 104 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 AC093850.1-201ENST00000454121 251 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 COX6CP14-201ENST00000469580 174 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 MIR7974-201ENST00000615835 79 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 AC106754.2-201ENST00000623006 233 ntBASIC1.21□□□□□ -2.22
CCDC3Q9BQI4 MIR96-201ENST00000362288 78 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.16-201ENST00000362421 102 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 RNU6-1084P-201ENST00000362498 107 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 MIR526A1-201ENST00000384897 85 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 MIR489-201ENST00000384923 84 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 MTCO2P33-201ENST00000402100 465 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 MIR1298-201ENST00000408783 112 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 PIGPP3-201ENST00000425307 415 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 SNORD11-201ENST00000459124 84 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 RNU6-830P-201ENST00000516353 107 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 RNU6-165P-201ENST00000517170 99 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 AC008507.4-201ENST00000585464 127 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 AL021707.8-201ENST00000609428 183 ntBASIC1.2□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.82-201ENST00000363000 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.92-201ENST00000363043 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.149-201ENST00000363558 117 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.235-201ENST00000364412 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.306-201ENST00000365015 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.312-201ENST00000365089 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.322-201ENST00000365151 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.556-201ENST00000384677 113 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 MIR136-201ENST00000385207 82 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 MIR1302-6-201ENST00000408466 90 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 SNRPGP14-201ENST00000435400 219 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.650-201ENST00000459002 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 NDUFA4P2-201ENST00000489989 244 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.777-201ENST00000516982 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 DEFB108E-201ENST00000524692 240 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 CYP3A52P-201ENST00000563326 91 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.771-201ENST00000598668 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 AL078603.1-201ENST00000603824 313 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 MIR8065-201ENST00000620577 100 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.789-201ENST00000622480 102 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 snoU18.1-201ENST00000629629 71 ntBASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
CCDC3Q9BQI4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 AC134026.1-201ENST00000623249 2239 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.44-201ENST00000362676 108 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 SNORD14E-201ENST00000364009 85 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 MLLT10P1-201ENST00000418346 262 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 AC015922.2-201ENST00000435593 184 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 SNORD2.1-201ENST00000458762 69 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 MTATP8P1-201ENST00000467115 207 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 MTCO2P24-201ENST00000515611 426 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 RNU6-922P-201ENST00000516753 99 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 RN7SKP88-201ENST00000516847 250 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 AL360085.1-201ENST00000604713 532 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 7SK.8-201ENST00000612110 250 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 7SK.11-201ENST00000615477 250 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 U2.14-201ENST00000615943 113 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 7SK.13-201ENST00000622040 250 ntBASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.133-201ENST00000363428 110 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 SNORD114-27-201ENST00000363766 70 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.237-201ENST00000364439 102 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 RNU6-442P-201ENST00000383968 104 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 Y_RNA.459-201ENST00000384251 102 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 RNU6-662P-201ENST00000384253 104 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 RNU6-472P-201ENST00000384299 107 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 AL078595.1-201ENST00000404458 226 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 RNU6-1045P-201ENST00000516321 107 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 SCARNA15.1-201ENST00000516384 125 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 RNU6-570P-201ENST00000517051 105 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 SNORA74.3-201ENST00000517108 154 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 AC090142.3-201ENST00000519012 385 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 RPL23AP91-201ENST00000569211 455 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 MIR4282-201ENST00000583613 67 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 FAM106DP-201ENST00000586416 501 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 AL008718.3-201ENST00000610217 321 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 AC006441.5-201ENST00000612680 209 ntBASIC1.17□□□□□ -2.22
CCDC3Q9BQI4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 216.5 ms