Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.99□□□□□ -2.09
NUP88Q99567 AC093850.1-201ENST00000454121 251 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 AC245047.8-201ENST00000456455 284 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 RNY3P16-201ENST00000516338 101 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 SNORD45.4-201ENST00000516629 73 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.99□□□□□ -2.09
NUP88Q99567 AC106754.2-201ENST00000623006 233 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 Y_RNA.200-201ENST00000364018 102 ntBASIC1.98□□□□□ -2.09
NUP88Q99567 RNY4P28-201ENST00000365281 93 ntBASIC1.98□□□□□ -2.09
NUP88Q99567 AC108729.3-201ENST00000513484 108 ntBASIC1.98□□□□□ -2.09
NUP88Q99567 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.98□□□□□ -2.09
NUP88Q99567 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.98□□□□□ -2.09
NUP88Q99567 MIR3198-2-201ENST00000577868 80 ntBASIC1.98□□□□□ -2.09
NUP88Q99567 MIR4762-201ENST00000585261 75 ntBASIC1.98□□□□□ -2.09
NUP88Q99567 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.98□□□□□ -2.09
NUP88Q99567 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
NUP88Q99567 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
NUP88Q99567 Y_RNA.229-201ENST00000364347 113 ntBASIC1.97□□□□□ -2.09
NUP88Q99567 Y_RNA.587-201ENST00000391210 103 ntBASIC1.97□□□□□ -2.09
NUP88Q99567 SNORD58.1-201ENST00000391313 66 ntBASIC1.97□□□□□ -2.09
NUP88Q99567 RNU4-62P-201ENST00000410125 130 ntBASIC1.97□□□□□ -2.09
NUP88Q99567 MIR5688-201ENST00000580619 83 ntBASIC1.97□□□□□ -2.09
NUP88Q99567 AC087685.1-201ENST00000587507 141 ntBASIC1.97□□□□□ -2.09
NUP88Q99567 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.97□□□□□ -2.09
NUP88Q99567 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
NUP88Q99567 MIRLET7C-201ENST00000362160 84 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 Y_RNA.83-201ENST00000363005 113 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 SNORD50B-201ENST00000364995 70 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 RN7SKP51-201ENST00000410781 304 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 HMGN2P32-201ENST00000444648 269 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 SNORD11-201ENST00000459124 84 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.96□□□□□ -2.1
NUP88Q99567 SNORA77B-201ENST00000578179 125 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 MIR3618-201ENST00000580330 88 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 MIR502-201ENST00000606349 86 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 AC141273.2-201ENST00000618989 130 ntBASIC1.96□□□□□ -2.1
NUP88Q99567 RNU6-653P-201ENST00000363074 106 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 MIR194-1-201ENST00000384892 85 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 RN7SKP101-201ENST00000411376 320 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.95□□□□□ -2.1
NUP88Q99567 COX6CP14-201ENST00000469580 174 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 NDUFA4P2-201ENST00000489989 244 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 AC012493.3-201ENST00000604494 112 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 AC011921.3-201ENST00000605540 361 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 AC090425.1-201ENST00000610007 140 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 uc_338.4-201ENST00000616635 176 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 AC027279.3-201ENST00000625055 122 ntBASIC1.95□□□□□ -2.1
NUP88Q99567 WWP1P1-201ENST00000466609 2769 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 RNU6-199P-201ENST00000362954 107 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 Y_RNA.242-201ENST00000364473 110 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 RNU6-442P-201ENST00000383968 104 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 AL161935.2-201ENST00000414627 60 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 BTF3P4-201ENST00000418852 495 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 AC008834.1-201ENST00000511612 175 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 RNU6-1053P-201ENST00000515930 101 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 RN7SKP164-201ENST00000516138 266 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 AC019176.1-201ENST00000518519 225 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.94□□□□□ -2.1
NUP88Q99567 AC009779.6-201ENST00000603972 165 ntBASIC1.94□□□□□ -2.1
NUP88Q99567 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
NUP88Q99567 RNU6-833P-201ENST00000363486 107 ntBASIC1.93□□□□□ -2.1
NUP88Q99567 RNY1-201ENST00000364228 113 ntBASIC1.93□□□□□ -2.1
NUP88Q99567 SNORD48-201ENST00000364953 64 ntBASIC1.93□□□□□ -2.1
NUP88Q99567 MT-TT-201ENST00000387460 66 ntBASIC1.93□□□□□ -2.1
NUP88Q99567 CBX3P4-201ENST00000538909 354 ntBASIC1.93□□□□□ -2.1
NUP88Q99567 MIR3122-201ENST00000577243 73 ntBASIC1.93□□□□□ -2.1
NUP88Q99567 MIR4498-201ENST00000577599 66 ntBASIC1.93□□□□□ -2.1
NUP88Q99567 MIR4255-201ENST00000579351 72 ntBASIC1.93□□□□□ -2.1
NUP88Q99567 MIR411-201ENST00000362239 96 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 snoU2_19.4-201ENST00000364329 80 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 MIR452-201ENST00000385020 85 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 AC079140.2-201ENST00000506193 142 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.92□□□□□ -2.1
NUP88Q99567 RNU7-149P-201ENST00000516739 59 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 AC130289.1-201ENST00000577321 73 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.92□□□□□ -2.1
NUP88Q99567 MIR3937-201ENST00000580135 106 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 AC008507.4-201ENST00000585464 127 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 AL645939.4-201ENST00000604495 135 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 Pinc.1-201ENST00000616452 154 ntBASIC1.92□□□□□ -2.1
NUP88Q99567 MIR378A-201ENST00000362177 66 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 Y_RNA.257-201ENST00000364596 102 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 Y_RNA.336-201ENST00000365307 109 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 MIR616-201ENST00000385293 97 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 SNORD72-201ENST00000390994 80 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 RNU6-381P-201ENST00000391259 108 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 AL606845.1-201ENST00000404881 255 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 Y_RNA.622-201ENST00000411091 108 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 RNU6-847P-201ENST00000411115 108 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.91□□□□□ -2.1
NUP88Q99567 RNU6-453P-201ENST00000516819 85 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 AC015688.6-201ENST00000577737 104 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 MIR4781-201ENST00000585250 76 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 RNU2-4P-201ENST00000606190 192 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 AL021707.8-201ENST00000609428 183 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.91□□□□□ -2.1
NUP88Q99567 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
NUP88Q99567 RNU6-1020P-201ENST00000363684 107 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms