Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AC068700.1-201ENST00000565862 3754 ntBASIC0.69□□□□□ -2.3
ZNF560Q96MR9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
ZNF560Q96MR9 RNU6-268P-201ENST00000364174 107 ntBASIC0.68□□□□□ -2.3
ZNF560Q96MR9 RNU6-1335P-201ENST00000365426 107 ntBASIC0.68□□□□□ -2.3
ZNF560Q96MR9 RNU6-937P-201ENST00000384325 106 ntBASIC0.68□□□□□ -2.3
ZNF560Q96MR9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.68□□□□□ -2.3
ZNF560Q96MR9 RNU6-437P-201ENST00000459408 95 ntBASIC0.68□□□□□ -2.3
ZNF560Q96MR9 AC098869.1-201ENST00000481627 292 ntBASIC0.68□□□□□ -2.3
ZNF560Q96MR9 AC008507.4-201ENST00000585464 127 ntBASIC0.68□□□□□ -2.3
ZNF560Q96MR9 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.68□□□□□ -2.3
ZNF560Q96MR9 MIR6516-201ENST00000630554 81 ntBASIC0.68□□□□□ -2.3
ZNF560Q96MR9 Y_RNA.263-201ENST00000364659 114 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 RNU1-133P-201ENST00000364867 167 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 Y_RNA.354-201ENST00000365448 111 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 U8.17-201ENST00000391292 132 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 SNORD99-201ENST00000408612 74 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 RNU4-30P-201ENST00000410245 143 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 RNU6-613P-201ENST00000410412 108 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 SNORA36B-201ENST00000410438 131 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 MTND1P14-201ENST00000427400 950 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.67□□□□□ -2.3
ZNF560Q96MR9 SEPT14P8-201ENST00000508026 178 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 MIR3145-201ENST00000580727 82 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 RNU6-94P-201ENST00000607728 107 ntBASIC0.67□□□□□ -2.3
ZNF560Q96MR9 Y_RNA.143-201ENST00000363520 106 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 RNU4-50P-201ENST00000364361 141 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 RNY3-201ENST00000365484 102 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 Y_RNA.383-201ENST00000383855 97 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 Y_RNA.529-201ENST00000384586 119 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 RNU6-1009P-201ENST00000390996 107 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 RNU6-994P-201ENST00000410507 111 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 RNU6-733P-201ENST00000410759 104 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 RNU7-141P-201ENST00000459304 62 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 RNU6-475P-201ENST00000516073 104 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 MIR2115-201ENST00000516657 100 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 SNORD113-5-201ENST00000607261 78 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 AC006441.5-201ENST00000612680 209 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 7SK.10-201ENST00000621414 298 ntBASIC0.66□□□□□ -2.3
ZNF560Q96MR9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.3
ZNF560Q96MR9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.65□□□□□ -2.3
ZNF560Q96MR9 RNU6-654P-201ENST00000364373 107 ntBASIC0.65□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.303-201ENST00000364998 94 ntBASIC0.65□□□□□ -2.31
ZNF560Q96MR9 SNORA72.4-201ENST00000384174 132 ntBASIC0.65□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.537-201ENST00000384626 109 ntBASIC0.65□□□□□ -2.31
ZNF560Q96MR9 AC005534.2-201ENST00000431047 433 ntBASIC0.65□□□□□ -2.31
ZNF560Q96MR9 POLR2KP2-201ENST00000438155 177 ntBASIC0.65□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.80-201ENST00000362996 102 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.118-201ENST00000363300 101 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 RNU6-801P-201ENST00000364087 105 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 SNORA1.2-201ENST00000365189 134 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 RNU6-396P-201ENST00000365369 105 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.471-201ENST00000384312 102 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.485-201ENST00000384395 102 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 MIR1827-201ENST00000408549 66 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 AC010655.3-201ENST00000478818 450 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 RPL23AP91-201ENST00000569211 455 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.64□□□□□ -2.31
ZNF560Q96MR9 AC023934.1-201ENST00000574529 2389 ntBASIC0.64□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.168-201ENST00000363740 102 ntBASIC0.63□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.356-201ENST00000365475 113 ntBASIC0.63□□□□□ -2.31
ZNF560Q96MR9 SNORA2B-201ENST00000384583 137 ntBASIC0.63□□□□□ -2.31
ZNF560Q96MR9 MTCO2P33-201ENST00000402100 465 ntBASIC0.63□□□□□ -2.31
ZNF560Q96MR9 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.63□□□□□ -2.31
ZNF560Q96MR9 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.63□□□□□ -2.31
ZNF560Q96MR9 AC040926.1-201ENST00000530195 238 ntBASIC0.63□□□□□ -2.31
ZNF560Q96MR9 AC104695.3-201ENST00000604052 296 ntBASIC0.63□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.197-201ENST00000364004 102 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 SNORA51.10-201ENST00000384418 136 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 AL603910.2-201ENST00000407268 136 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 MIR1302-11-201ENST00000408051 138 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 MIR1302-9-201ENST00000408365 138 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 MIR1302-10-201ENST00000408734 138 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 MIR1278-201ENST00000408753 81 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 RNU2-14P-201ENST00000411053 191 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 MTND5P20-201ENST00000448677 143 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.62□□□□□ -2.31
ZNF560Q96MR9 SNORD11-201ENST00000459124 84 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 AC004817.2-201ENST00000561794 651 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 MIR1302-2-201ENST00000607096 138 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 MIR6515-201ENST00000619843 57 ntBASIC0.62□□□□□ -2.31
ZNF560Q96MR9 MIR1-1-201ENST00000362147 71 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 RNA5SP347-201ENST00000362445 119 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 RNU4-80P-201ENST00000363200 141 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 RNU6-1048P-201ENST00000364054 107 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.222-201ENST00000364264 102 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 Y_RNA.315-201ENST00000365117 102 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 MIR570-201ENST00000384917 97 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 SNORD72-201ENST00000390994 80 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 RNU1-119P-201ENST00000391122 165 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 RNU6-130P-201ENST00000411112 103 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 SCARNA8-201ENST00000515924 131 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 RNU7-181P-201ENST00000517234 74 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 AC005357.1-201ENST00000588399 301 ntBASIC0.61□□□□□ -2.31
ZNF560Q96MR9 MIR4791-201ENST00000607666 84 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms