Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PART1_1.1-201ENST00000611761 217 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 AC122108.2-201ENST00000611946 526 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.52□□□□□ -2.33
PKNOX1P55347 RNU6-369P-201ENST00000362515 102 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 Y_RNA.168-201ENST00000363740 102 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 RNU4-50P-201ENST00000364361 141 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 SNORA72.4-201ENST00000384174 132 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 Y_RNA.529-201ENST00000384586 119 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 RNU6-21P-201ENST00000384710 107 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 MIR520E-201ENST00000384867 87 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 MIR802-201ENST00000390235 94 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 RNU1-119P-201ENST00000391122 165 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 SNORA26.5-201ENST00000391215 123 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 AC005534.2-201ENST00000431047 433 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 U8.20-201ENST00000459445 131 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 RNU4-57P-201ENST00000515980 135 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 RNA5SP121-201ENST00000516537 101 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 MIR2115-201ENST00000516657 100 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 AL080274.1-201ENST00000605565 220 ntBASIC0.51□□□□□ -2.33
PKNOX1P55347 RNA5SP432-201ENST00000362480 116 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 Y_RNA.315-201ENST00000365117 102 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
PKNOX1P55347 SNORA51.10-201ENST00000384418 136 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 RNY1P14-201ENST00000384426 108 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 RNU6-1067P-201ENST00000384752 107 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.5□□□□□ -2.33
PKNOX1P55347 RNU6-976P-201ENST00000516086 111 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.5□□□□□ -2.33
PKNOX1P55347 AC011195.1-201ENST00000578177 177 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 MIR2681-201ENST00000581814 105 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 AL136317.1-201ENST00000612653 226 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 AC006441.5-201ENST00000612680 209 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 AC015726.2-201ENST00000620112 122 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 MTND1P7-201ENST00000632801 297 ntBASIC0.5□□□□□ -2.33
PKNOX1P55347 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
PKNOX1P55347 SNORD45.3-201ENST00000363836 72 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 Y_RNA.537-201ENST00000384626 109 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 SNORD105-201ENST00000386910 85 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.49□□□□□ -2.33
PKNOX1P55347 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 RNU2-13P-201ENST00000515909 113 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 RNU4-54P-201ENST00000516428 129 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 AC018659.1-201ENST00000551083 169 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 MIR4791-201ENST00000607666 84 ntBASIC0.49□□□□□ -2.33
PKNOX1P55347 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.49□□□□□ -2.33
PKNOX1P55347 Y_RNA.58-201ENST00000362807 102 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 Y_RNA.154-201ENST00000363624 102 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 Y_RNA.164-201ENST00000363709 102 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 Y_RNA.263-201ENST00000364659 114 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 RNY3P1-201ENST00000365085 102 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 RNU6-396P-201ENST00000365369 105 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 RNY3-201ENST00000365484 102 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 RNU6-945P-201ENST00000383947 107 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 Y_RNA.418-201ENST00000384029 102 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 Y_RNA.471-201ENST00000384312 102 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 POLR2KP2-201ENST00000438155 177 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 snoU13.21-201ENST00000459368 105 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.48□□□□□ -2.33
PKNOX1P55347 Y_RNA.713-201ENST00000517013 96 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 AC040926.1-201ENST00000530195 238 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.48□□□□□ -2.33
PKNOX1P55347 MIR4300-201ENST00000581016 96 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 AC112487.2-201ENST00000637950 304 ntBASIC0.48□□□□□ -2.33
PKNOX1P55347 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.47□□□□□ -2.33
PKNOX1P55347 SNORD18A-201ENST00000363753 72 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 Y_RNA.222-201ENST00000364264 102 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 SNORA25.9-201ENST00000365087 128 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 RNY1P8-201ENST00000383970 114 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 Y_RNA.526-201ENST00000384572 110 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 MIR1276-201ENST00000408707 83 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 AC082651.2-201ENST00000496833 166 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 RNU6-507P-201ENST00000516045 100 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 RNU6-191P-201ENST00000516295 94 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.47□□□□□ -2.33
PKNOX1P55347 AC104695.3-201ENST00000604052 296 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 SNORD113-5-201ENST00000607261 78 ntBASIC0.47□□□□□ -2.33
PKNOX1P55347 MIR377-201ENST00000362145 69 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 MIR1-1-201ENST00000362147 71 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 RNU6-580P-201ENST00000365159 107 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 Y_RNA.356-201ENST00000365475 113 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 MT-TN-201ENST00000387400 73 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 AC236972.2-201ENST00000434979 310 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 SEPT14P8-201ENST00000508026 178 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 RNU6-1046P-201ENST00000516538 107 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 AC006157.1-201ENST00000611750 366 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 AC007485.1-201ENST00000616755 206 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.46□□□□□ -2.34
PKNOX1P55347 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
PKNOX1P55347 Y_RNA.191-201ENST00000363972 113 ntBASIC0.45□□□□□ -2.34
PKNOX1P55347 RNA5SP499-201ENST00000363982 119 ntBASIC0.45□□□□□ -2.34
PKNOX1P55347 RNU6-125P-201ENST00000384505 107 ntBASIC0.45□□□□□ -2.34
PKNOX1P55347 Y_RNA.579-201ENST00000390939 94 ntBASIC0.45□□□□□ -2.34
PKNOX1P55347 RNA5SP222-201ENST00000411039 105 ntBASIC0.45□□□□□ -2.34
PKNOX1P55347 RNU6-475P-201ENST00000516073 104 ntBASIC0.45□□□□□ -2.34
PKNOX1P55347 MIR4714-201ENST00000580728 77 ntBASIC0.45□□□□□ -2.34
PKNOX1P55347 AC243994.1-201ENST00000618627 109 ntBASIC0.45□□□□□ -2.34
PKNOX1P55347 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms