Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC091951.2-201ENST00000500762 203 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.3□□□□□ -2.36
FOXA1P55317 MIR2115-201ENST00000516657 100 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 AC024405.2-202ENST00000532731 184 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 AP003357.1-201ENST00000604497 148 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 JPX_2.1-201ENST00000614161 69 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 Pinc.1-201ENST00000616452 154 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 AC022306.2-201ENST00000617563 647 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 RNU6-1209P-201ENST00000363655 107 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 Y_RNA.168-201ENST00000363740 102 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 RNU6-396P-201ENST00000365369 105 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 Y_RNA.370-201ENST00000365589 108 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 RNU6-716P-201ENST00000365621 103 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 Y_RNA.456-201ENST00000384232 111 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 MIR559-201ENST00000385188 96 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 MIR802-201ENST00000390235 94 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 U8.17-201ENST00000391292 132 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 RNU6-876P-201ENST00000391295 104 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 AF228730.4-201ENST00000421457 183 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 Y_RNA.653-201ENST00000459091 95 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 NDUFA4P2-201ENST00000489989 244 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 RNU6-559P-201ENST00000516151 98 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 RNU6-830P-201ENST00000516353 107 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 AC087685.1-201ENST00000587507 141 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 DEFB117-201ENST00000602356 141 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 AC104695.3-201ENST00000604052 296 ntBASIC0.29□□□□□ -2.36
FOXA1P55317 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
FOXA1P55317 RNU6-369P-201ENST00000362515 102 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 RNU6-268P-201ENST00000364174 107 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 U8.7-201ENST00000364940 136 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 Y_RNA.331-201ENST00000365267 102 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 Y_RNA.474-201ENST00000384341 102 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 SNORA51.10-201ENST00000384418 136 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 MT-TL1-201ENST00000386347 75 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.28□□□□□ -2.36
FOXA1P55317 AC099799.1-201ENST00000439809 192 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 RNU7-115P-201ENST00000516433 55 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 RNU7-181P-201ENST00000517234 74 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 AC127455.1-201ENST00000565496 145 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 MIR548AO-201ENST00000579992 96 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 MIR4423-201ENST00000580922 80 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 MIR5188-201ENST00000583467 113 ntBASIC0.28□□□□□ -2.36
FOXA1P55317 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
FOXA1P55317 RNU6-490P-201ENST00000362985 107 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 SNORD81.1-201ENST00000363064 77 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 MTCO2P33-201ENST00000402100 465 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 RNU6-177P-201ENST00000411257 104 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 RNU6-699P-201ENST00000517081 110 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.27□□□□□ -2.37
FOXA1P55317 AC006600.1-201ENST00000572529 153 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 AC008507.4-201ENST00000585464 127 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 VN1R91P-201ENST00000594377 169 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 AC113139.1-201ENST00000605049 239 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 MIR548AY-201ENST00000617669 107 ntBASIC0.27□□□□□ -2.37
FOXA1P55317 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.26□□□□□ -2.37
FOXA1P55317 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.26□□□□□ -2.37
FOXA1P55317 SNORD45.3-201ENST00000363836 72 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 Y_RNA.537-201ENST00000384626 109 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MIR573-201ENST00000384964 99 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MIR140-201ENST00000385282 100 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MIR1278-201ENST00000408753 81 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MTCO2P12-201ENST00000427426 682 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 snoU13.21-201ENST00000459368 105 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 RN7SKP12-201ENST00000516275 143 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MIR3145-201ENST00000580727 82 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MIR4514-201ENST00000581410 57 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MIR4791-201ENST00000607666 84 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 AC133104.2-201ENST00000615272 193 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MIR2909-201ENST00000617113 69 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 MTND1P7-201ENST00000632801 297 ntBASIC0.26□□□□□ -2.37
FOXA1P55317 Y_RNA.85-201ENST00000363014 111 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 RNU6-580P-201ENST00000365159 107 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 Y_RNA.376-201ENST00000365638 108 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 MT-TN-201ENST00000387400 73 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 RNU6-205P-201ENST00000390858 107 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 SNORD72-201ENST00000390994 80 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 AC024067.1-201ENST00000426199 223 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.25□□□□□ -2.37
FOXA1P55317 SNORA68.3-201ENST00000515906 83 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 RPL23AP91-201ENST00000569211 455 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.25□□□□□ -2.37
FOXA1P55317 AC010205.1-201ENST00000616668 449 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 AC015726.2-201ENST00000620112 122 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 MIR4272-201ENST00000635924 64 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 MTND4LP32-201ENST00000636111 270 ntBASIC0.25□□□□□ -2.37
FOXA1P55317 MIR377-201ENST00000362145 69 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 Y_RNA.248-201ENST00000364501 109 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 RNU6-934P-201ENST00000365154 107 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 Y_RNA.462-201ENST00000384268 102 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 MIR520F-201ENST00000384824 87 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 MIR520H-201ENST00000385126 88 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 AL603910.2-201ENST00000407268 136 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 RNA5SP127-201ENST00000411051 133 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 SNORD83.1-201ENST00000411362 77 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 AC015818.7-201ENST00000428754 109 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 AC087499.7-201ENST00000441958 109 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 RNU6-437P-201ENST00000459408 95 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 AC002350.1-201ENST00000490759 375 ntBASIC0.24□□□□□ -2.37
FOXA1P55317 RNU6-977P-201ENST00000516411 103 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 183.2 ms