Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.69□□□□□ -1.98
LIG3P49916 AC027279.3-201ENST00000625055 122 ntBASIC2.69□□□□□ -1.98
LIG3P49916 MIR3914-2-201ENST00000637339 95 ntBASIC2.69□□□□□ -1.98
LIG3P49916 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
LIG3P49916 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.69□□□□□ -1.98
LIG3P49916 RNU6-508P-201ENST00000363231 103 ntBASIC2.68□□□□□ -1.98
LIG3P49916 RNU6-1189P-201ENST00000383958 107 ntBASIC2.68□□□□□ -1.98
LIG3P49916 SNORD38C-201ENST00000384381 69 ntBASIC2.68□□□□□ -1.98
LIG3P49916 Y_RNA.547-201ENST00000384654 119 ntBASIC2.68□□□□□ -1.98
LIG3P49916 MIR3162-201ENST00000581818 82 ntBASIC2.68□□□□□ -1.98
LIG3P49916 MIR4672-201ENST00000583126 81 ntBASIC2.68□□□□□ -1.98
LIG3P49916 AC015726.2-201ENST00000620112 122 ntBASIC2.68□□□□□ -1.98
LIG3P49916 U6.95-201ENST00000636931 70 ntBASIC2.68□□□□□ -1.98
LIG3P49916 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
LIG3P49916 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
LIG3P49916 MIRLET7C-201ENST00000362160 84 ntBASIC2.67□□□□□ -1.98
LIG3P49916 Y_RNA.500-201ENST00000384466 111 ntBASIC2.67□□□□□ -1.98
LIG3P49916 RNA5SP501-201ENST00000410990 112 ntBASIC2.67□□□□□ -1.98
LIG3P49916 AL445646.1-201ENST00000431784 216 ntBASIC2.67□□□□□ -1.98
LIG3P49916 Y_RNA.651-201ENST00000459380 103 ntBASIC2.67□□□□□ -1.98
LIG3P49916 SUB1P4-201ENST00000566062 339 ntBASIC2.67□□□□□ -1.98
LIG3P49916 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.67□□□□□ -1.98
LIG3P49916 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
LIG3P49916 AC080100.1-201ENST00000624239 5356 ntBASIC2.67□□□□□ -1.98
LIG3P49916 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
LIG3P49916 Y_RNA.37-201ENST00000362606 108 ntBASIC2.66□□□□□ -1.98
LIG3P49916 RNA5SP393-201ENST00000363423 117 ntBASIC2.66□□□□□ -1.98
LIG3P49916 RNU6-1325P-201ENST00000364905 105 ntBASIC2.66□□□□□ -1.98
LIG3P49916 SNORA4.2-201ENST00000365313 147 ntBASIC2.66□□□□□ -1.98
LIG3P49916 RNU1-51P-201ENST00000365345 176 ntBASIC2.66□□□□□ -1.98
LIG3P49916 RNU6-1064P-201ENST00000410626 104 ntBASIC2.66□□□□□ -1.98
LIG3P49916 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.66□□□□□ -1.98
LIG3P49916 AL021397.1-201ENST00000451806 248 ntBASIC2.66□□□□□ -1.98
LIG3P49916 RNU6-113P-201ENST00000516653 101 ntBASIC2.66□□□□□ -1.98
LIG3P49916 RNA5SP82-201ENST00000516707 92 ntBASIC2.66□□□□□ -1.98
LIG3P49916 SCARNA15-202ENST00000516881 127 ntBASIC2.66□□□□□ -1.98
LIG3P49916 RNU6-1116P-201ENST00000517269 99 ntBASIC2.66□□□□□ -1.98
LIG3P49916 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.66□□□□□ -1.98
LIG3P49916 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.66□□□□□ -1.98
LIG3P49916 U1.36-201ENST00000620684 176 ntBASIC2.66□□□□□ -1.98
LIG3P49916 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIG3P49916 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
LIG3P49916 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.65□□□□□ -1.99
LIG3P49916 SNORD58C-201ENST00000365223 64 ntBASIC2.65□□□□□ -1.99
LIG3P49916 RNU6-424P-201ENST00000384367 105 ntBASIC2.65□□□□□ -1.99
LIG3P49916 RNU6-476P-201ENST00000384726 107 ntBASIC2.65□□□□□ -1.99
LIG3P49916 RNU6-1031P-201ENST00000384773 107 ntBASIC2.65□□□□□ -1.99
LIG3P49916 Y_RNA.617-201ENST00000410920 90 ntBASIC2.65□□□□□ -1.99
LIG3P49916 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.65□□□□□ -1.99
LIG3P49916 CALM2P4-201ENST00000430810 426 ntBASIC2.65□□□□□ -1.99
LIG3P49916 RNU6-919P-201ENST00000516731 104 ntBASIC2.65□□□□□ -1.99
LIG3P49916 MIR376A2-201ENST00000636782 80 ntBASIC2.65□□□□□ -1.99
LIG3P49916 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
LIG3P49916 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
LIG3P49916 AC005336.3-201ENST00000623833 2679 ntBASIC2.64□□□□□ -1.99
LIG3P49916 SNORA2.2-201ENST00000365473 135 ntBASIC2.64□□□□□ -1.99
LIG3P49916 RNU1-52P-201ENST00000384190 164 ntBASIC2.64□□□□□ -1.99
LIG3P49916 RPS12P2-201ENST00000439728 269 ntBASIC2.64□□□□□ -1.99
LIG3P49916 AC087499.4-201ENST00000448505 178 ntBASIC2.64□□□□□ -1.99
LIG3P49916 RNU7-34P-201ENST00000459394 64 ntBASIC2.64□□□□□ -1.99
LIG3P49916 RPL23AP63-201ENST00000498752 471 ntBASIC2.64□□□□□ -1.99
LIG3P49916 RNA5SP481-201ENST00000516814 122 ntBASIC2.64□□□□□ -1.99
LIG3P49916 MIR4513-201ENST00000581077 86 ntBASIC2.64□□□□□ -1.99
LIG3P49916 MIR4635-201ENST00000583759 79 ntBASIC2.64□□□□□ -1.99
LIG3P49916 RNU6-112P-201ENST00000363599 104 ntBASIC2.63□□□□□ -1.99
LIG3P49916 SNORA40.5-201ENST00000391061 128 ntBASIC2.63□□□□□ -1.99
LIG3P49916 U8.16-201ENST00000391279 133 ntBASIC2.63□□□□□ -1.99
LIG3P49916 AL035461.1-201ENST00000421490 332 ntBASIC2.63□□□□□ -1.99
LIG3P49916 RN7SKP19-201ENST00000516016 252 ntBASIC2.63□□□□□ -1.99
LIG3P49916 RNA5SP168-201ENST00000516642 112 ntBASIC2.63□□□□□ -1.99
LIG3P49916 RNA5SP437-201ENST00000517249 129 ntBASIC2.63□□□□□ -1.99
LIG3P49916 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.63□□□□□ -1.99
LIG3P49916 MIR4529-201ENST00000578110 78 ntBASIC2.63□□□□□ -1.99
LIG3P49916 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.63□□□□□ -1.99
LIG3P49916 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
LIG3P49916 RNU6-833P-201ENST00000363486 107 ntBASIC2.62□□□□□ -1.99
LIG3P49916 SNORA3A-201ENST00000364113 130 ntBASIC2.62□□□□□ -1.99
LIG3P49916 RNU6-1144P-201ENST00000384247 104 ntBASIC2.62□□□□□ -1.99
LIG3P49916 AC007064.1-201ENST00000412238 351 ntBASIC2.62□□□□□ -1.99
LIG3P49916 SUMO1P4-201ENST00000429430 302 ntBASIC2.62□□□□□ -1.99
LIG3P49916 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.62□□□□□ -1.99
LIG3P49916 RNU7-70P-201ENST00000516941 66 ntBASIC2.62□□□□□ -1.99
LIG3P49916 AP003484.1-201ENST00000530974 250 ntBASIC2.62□□□□□ -1.99
LIG3P49916 MTND5P34-201ENST00000568888 325 ntBASIC2.62□□□□□ -1.99
LIG3P49916 MIR4709-201ENST00000577272 72 ntBASIC2.62□□□□□ -1.99
LIG3P49916 RNU7-12P-201ENST00000516030 62 ntBASIC2.61□□□□□ -1.99
LIG3P49916 RNU6-781P-201ENST00000516377 101 ntBASIC2.61□□□□□ -1.99
LIG3P49916 SNORD36C-201ENST00000516733 66 ntBASIC2.61□□□□□ -1.99
LIG3P49916 SNORA18.7-201ENST00000516910 131 ntBASIC2.61□□□□□ -1.99
LIG3P49916 SNORA31.25-201ENST00000517242 134 ntBASIC2.61□□□□□ -1.99
LIG3P49916 MIR5194-201ENST00000582634 120 ntBASIC2.61□□□□□ -1.99
LIG3P49916 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
LIG3P49916 RNA5SP68-201ENST00000363885 119 ntBASIC2.6□□□□□ -1.99
LIG3P49916 Y_RNA.346-201ENST00000365385 112 ntBASIC2.6□□□□□ -1.99
LIG3P49916 RNU6-296P-201ENST00000384608 107 ntBASIC2.6□□□□□ -1.99
LIG3P49916 RNA5SP450-201ENST00000411206 102 ntBASIC2.6□□□□□ -1.99
LIG3P49916 Y_RNA.630-201ENST00000411370 108 ntBASIC2.6□□□□□ -1.99
LIG3P49916 AC015922.2-201ENST00000435593 184 ntBASIC2.6□□□□□ -1.99
LIG3P49916 snoU13.27-201ENST00000459278 104 ntBASIC2.6□□□□□ -1.99
LIG3P49916 SNORD33.1-201ENST00000516213 88 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms