Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 Y_RNA.164-201ENST00000363709 102 ntBASIC1□□□□□ -2.25
CDX1P47902 Y_RNA.242-201ENST00000364473 110 ntBASIC1□□□□□ -2.25
CDX1P47902 MIR215-201ENST00000384858 110 ntBASIC1□□□□□ -2.25
CDX1P47902 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1□□□□□ -2.25
CDX1P47902 AC090821.2-201ENST00000523552 176 ntBASIC1□□□□□ -2.25
CDX1P47902 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1□□□□□ -2.25
CDX1P47902 MIR4781-201ENST00000585250 76 ntBASIC1□□□□□ -2.25
CDX1P47902 MIR6078-201ENST00000611069 100 ntBASIC1□□□□□ -2.25
CDX1P47902 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
CDX1P47902 Y_RNA.64-201ENST00000362845 102 ntBASIC0.99□□□□□ -2.25
CDX1P47902 RNA5SP264-201ENST00000363115 107 ntBASIC0.99□□□□□ -2.25
CDX1P47902 Y_RNA.276-201ENST00000364732 109 ntBASIC0.99□□□□□ -2.25
CDX1P47902 RNU6-806P-201ENST00000365147 105 ntBASIC0.99□□□□□ -2.25
CDX1P47902 RNU6-326P-201ENST00000365480 107 ntBASIC0.99□□□□□ -2.25
CDX1P47902 SNORA22-201ENST00000383907 134 ntBASIC0.99□□□□□ -2.25
CDX1P47902 SNORA22C-201ENST00000384614 134 ntBASIC0.99□□□□□ -2.25
CDX1P47902 Y_RNA.541-201ENST00000384640 113 ntBASIC0.99□□□□□ -2.25
CDX1P47902 MIR19B1-201ENST00000384829 87 ntBASIC0.99□□□□□ -2.25
CDX1P47902 RPL21P38-201ENST00000418090 167 ntBASIC0.99□□□□□ -2.25
CDX1P47902 OR2A41P-201ENST00000473586 105 ntBASIC0.99□□□□□ -2.25
CDX1P47902 RNU7-41P-201ENST00000515917 61 ntBASIC0.99□□□□□ -2.25
CDX1P47902 AP003733.2-201ENST00000529409 171 ntBASIC0.99□□□□□ -2.25
CDX1P47902 AC008507.4-201ENST00000585464 127 ntBASIC0.99□□□□□ -2.25
CDX1P47902 Y_RNA.11-201ENST00000362375 109 ntBASIC0.98□□□□□ -2.25
CDX1P47902 Y_RNA.14-201ENST00000362415 103 ntBASIC0.98□□□□□ -2.25
CDX1P47902 SNORA25.3-201ENST00000363205 127 ntBASIC0.98□□□□□ -2.25
CDX1P47902 RNU6-268P-201ENST00000364174 107 ntBASIC0.98□□□□□ -2.25
CDX1P47902 Y_RNA.330-201ENST00000365230 109 ntBASIC0.98□□□□□ -2.25
CDX1P47902 RNU6-639P-201ENST00000384074 107 ntBASIC0.98□□□□□ -2.25
CDX1P47902 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.98□□□□□ -2.25
CDX1P47902 AC005534.2-201ENST00000431047 433 ntBASIC0.98□□□□□ -2.25
CDX1P47902 RPS29P28-201ENST00000446439 141 ntBASIC0.98□□□□□ -2.25
CDX1P47902 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.98□□□□□ -2.25
CDX1P47902 snoU13.25-201ENST00000458945 104 ntBASIC0.98□□□□□ -2.25
CDX1P47902 RNU7-90P-201ENST00000459216 62 ntBASIC0.98□□□□□ -2.25
CDX1P47902 AC004223.1-201ENST00000479840 271 ntBASIC0.98□□□□□ -2.25
CDX1P47902 RPS23P4-201ENST00000487908 423 ntBASIC0.98□□□□□ -2.25
CDX1P47902 Pinc.1-201ENST00000616452 154 ntBASIC0.98□□□□□ -2.25
CDX1P47902 AC013791.1-201ENST00000616619 62 ntBASIC0.98□□□□□ -2.25
CDX1P47902 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.98□□□□□ -2.25
CDX1P47902 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.97□□□□□ -2.25
CDX1P47902 MIR103A2-201ENST00000362154 78 ntBASIC0.97□□□□□ -2.25
CDX1P47902 Y_RNA.293-201ENST00000364908 93 ntBASIC0.97□□□□□ -2.25
CDX1P47902 RNU6-1067P-201ENST00000384752 107 ntBASIC0.97□□□□□ -2.25
CDX1P47902 SNORD72-201ENST00000390994 80 ntBASIC0.97□□□□□ -2.25
CDX1P47902 SNORA75.2-201ENST00000391138 150 ntBASIC0.97□□□□□ -2.25
CDX1P47902 SNORA75.3-201ENST00000391231 150 ntBASIC0.97□□□□□ -2.25
CDX1P47902 BTF3P11-201ENST00000426582 477 ntBASIC0.97□□□□□ -2.25
CDX1P47902 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.97□□□□□ -2.25
CDX1P47902 SNORD11-201ENST00000459124 84 ntBASIC0.97□□□□□ -2.25
CDX1P47902 Y_RNA.637-201ENST00000459424 114 ntBASIC0.97□□□□□ -2.25
CDX1P47902 RNU7-21P-201ENST00000459430 62 ntBASIC0.97□□□□□ -2.25
CDX1P47902 RPS26P48-201ENST00000491713 339 ntBASIC0.97□□□□□ -2.25
CDX1P47902 RNU6-1137P-201ENST00000517073 99 ntBASIC0.97□□□□□ -2.25
CDX1P47902 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.97□□□□□ -2.25
CDX1P47902 MIR5692C2-201ENST00000577959 77 ntBASIC0.97□□□□□ -2.25
CDX1P47902 Y_RNA.26-201ENST00000362539 101 ntBASIC0.96□□□□□ -2.26
CDX1P47902 RNA5SP48-201ENST00000363969 126 ntBASIC0.96□□□□□ -2.26
CDX1P47902 SNORA33.2-201ENST00000365413 134 ntBASIC0.96□□□□□ -2.26
CDX1P47902 RNU6-662P-201ENST00000384253 104 ntBASIC0.96□□□□□ -2.26
CDX1P47902 RNU6-985P-201ENST00000410182 104 ntBASIC0.96□□□□□ -2.26
CDX1P47902 RNU6-383P-201ENST00000410864 94 ntBASIC0.96□□□□□ -2.26
CDX1P47902 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.96□□□□□ -2.26
CDX1P47902 AC091959.1-201ENST00000495857 238 ntBASIC0.96□□□□□ -2.26
CDX1P47902 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.96□□□□□ -2.26
CDX1P47902 MIR548AR-201ENST00000582191 57 ntBASIC0.96□□□□□ -2.26
CDX1P47902 AC012676.2-201ENST00000619258 186 ntBASIC0.96□□□□□ -2.26
CDX1P47902 AC015726.2-201ENST00000620112 122 ntBASIC0.96□□□□□ -2.26
CDX1P47902 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.96□□□□□ -2.26
CDX1P47902 MIR367-201ENST00000362299 68 ntBASIC0.95□□□□□ -2.26
CDX1P47902 RNU6-1272P-201ENST00000362776 107 ntBASIC0.95□□□□□ -2.26
CDX1P47902 Y_RNA.153-201ENST00000363615 91 ntBASIC0.95□□□□□ -2.26
CDX1P47902 Y_RNA.238-201ENST00000364441 102 ntBASIC0.95□□□□□ -2.26
CDX1P47902 SNORD114-24-201ENST00000365029 72 ntBASIC0.95□□□□□ -2.26
CDX1P47902 U8.17-201ENST00000391292 132 ntBASIC0.95□□□□□ -2.26
CDX1P47902 AC113618.1-201ENST00000416747 285 ntBASIC0.95□□□□□ -2.26
CDX1P47902 SNRPGP14-201ENST00000435400 219 ntBASIC0.95□□□□□ -2.26
CDX1P47902 AL731563.1-201ENST00000442202 214 ntBASIC0.95□□□□□ -2.26
CDX1P47902 SNORD124-201ENST00000459577 104 ntBASIC0.95□□□□□ -2.26
CDX1P47902 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.95□□□□□ -2.26
CDX1P47902 UBL5P1-201ENST00000507979 193 ntBASIC0.95□□□□□ -2.26
CDX1P47902 RNU6-830P-201ENST00000516353 107 ntBASIC0.95□□□□□ -2.26
CDX1P47902 SNORA27.4-201ENST00000516650 95 ntBASIC0.95□□□□□ -2.26
CDX1P47902 RNU6-1153P-201ENST00000516760 105 ntBASIC0.95□□□□□ -2.26
CDX1P47902 MIR4724-201ENST00000579485 89 ntBASIC0.95□□□□□ -2.26
CDX1P47902 Y_RNA.16-201ENST00000362421 102 ntBASIC0.94□□□□□ -2.26
CDX1P47902 Y_RNA.84-201ENST00000363011 104 ntBASIC0.94□□□□□ -2.26
CDX1P47902 RNU6-1227P-201ENST00000383981 107 ntBASIC0.94□□□□□ -2.26
CDX1P47902 MIR200A-201ENST00000384875 90 ntBASIC0.94□□□□□ -2.26
CDX1P47902 MIR942-201ENST00000401111 86 ntBASIC0.94□□□□□ -2.26
CDX1P47902 MTCYBP6-201ENST00000441810 138 ntBASIC0.94□□□□□ -2.26
CDX1P47902 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.94□□□□□ -2.26
CDX1P47902 RN7SKP164-201ENST00000516138 266 ntBASIC0.94□□□□□ -2.26
CDX1P47902 SCARNA24.2-201ENST00000516968 130 ntBASIC0.94□□□□□ -2.26
CDX1P47902 HSPE1P19-201ENST00000603327 295 ntBASIC0.94□□□□□ -2.26
CDX1P47902 AC136443.5-201ENST00000603741 370 ntBASIC0.94□□□□□ -2.26
CDX1P47902 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
CDX1P47902 AC008133.2-201ENST00000624540 351 ntBASIC0.94□□□□□ -2.26
CDX1P47902 MIR4251-201ENST00000635819 61 ntBASIC0.94□□□□□ -2.26
CDX1P47902 SNORD28B-201ENST00000390993 75 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 225 ms