Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.35□□□□□ -2.19
MSH2P43246 GHRLOS.1-201ENST00000610995 70 ntBASIC1.35□□□□□ -2.19
MSH2P43246 U2.14-201ENST00000615943 113 ntBASIC1.35□□□□□ -2.19
MSH2P43246 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.19
MSH2P43246 MIR378A-201ENST00000362177 66 ntBASIC1.34□□□□□ -2.19
MSH2P43246 Y_RNA.336-201ENST00000365307 109 ntBASIC1.34□□□□□ -2.19
MSH2P43246 RNU6-211P-201ENST00000384047 107 ntBASIC1.34□□□□□ -2.19
MSH2P43246 MTCYBP9-201ENST00000431021 303 ntBASIC1.34□□□□□ -2.19
MSH2P43246 RNU7-40P-201ENST00000516397 64 ntBASIC1.34□□□□□ -2.19
MSH2P43246 RNU6-165P-201ENST00000517170 99 ntBASIC1.34□□□□□ -2.19
MSH2P43246 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.34□□□□□ -2.19
MSH2P43246 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.34□□□□□ -2.19
MSH2P43246 FAM106DP-201ENST00000586416 501 ntBASIC1.34□□□□□ -2.19
MSH2P43246 ZNF209P-201ENST00000593450 2304 ntBASIC1.34□□□□□ -2.2
MSH2P43246 Y_RNA.117-201ENST00000363294 101 ntBASIC1.33□□□□□ -2.2
MSH2P43246 SNORD14E-201ENST00000364009 85 ntBASIC1.33□□□□□ -2.2
MSH2P43246 RNU6-740P-201ENST00000364734 105 ntBASIC1.33□□□□□ -2.2
MSH2P43246 Y_RNA.293-201ENST00000364908 93 ntBASIC1.33□□□□□ -2.2
MSH2P43246 RNU6-383P-201ENST00000410864 94 ntBASIC1.33□□□□□ -2.2
MSH2P43246 AC009474.2-201ENST00000451383 136 ntBASIC1.33□□□□□ -2.2
MSH2P43246 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.33□□□□□ -2.2
MSH2P43246 AC090142.3-201ENST00000519012 385 ntBASIC1.33□□□□□ -2.2
MSH2P43246 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
MSH2P43246 MIR568-201ENST00000385036 95 ntBASIC1.32□□□□□ -2.2
MSH2P43246 AL118496.2-201ENST00000448300 230 ntBASIC1.32□□□□□ -2.2
MSH2P43246 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.32□□□□□ -2.2
MSH2P43246 DNAJC19P9-201ENST00000555084 351 ntBASIC1.32□□□□□ -2.2
MSH2P43246 MIR4724-201ENST00000579485 89 ntBASIC1.32□□□□□ -2.2
MSH2P43246 AC008507.4-201ENST00000585464 127 ntBASIC1.32□□□□□ -2.2
MSH2P43246 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.32□□□□□ -2.2
MSH2P43246 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.32□□□□□ -2.2
MSH2P43246 MIR367-201ENST00000362299 68 ntBASIC1.31□□□□□ -2.2
MSH2P43246 RNU6-939P-201ENST00000384634 107 ntBASIC1.31□□□□□ -2.2
MSH2P43246 MIR516B2-201ENST00000385190 85 ntBASIC1.31□□□□□ -2.2
MSH2P43246 MIR136-201ENST00000385207 82 ntBASIC1.31□□□□□ -2.2
MSH2P43246 RNA5SP496-201ENST00000391240 109 ntBASIC1.31□□□□□ -2.2
MSH2P43246 BTF3P4-201ENST00000418852 495 ntBASIC1.31□□□□□ -2.2
MSH2P43246 RN7SKP179-201ENST00000516126 217 ntBASIC1.31□□□□□ -2.2
MSH2P43246 RNU6-1007P-201ENST00000516586 107 ntBASIC1.31□□□□□ -2.2
MSH2P43246 AL357312.1-201ENST00000603879 298 ntBASIC1.31□□□□□ -2.2
MSH2P43246 AL021707.8-201ENST00000609428 183 ntBASIC1.31□□□□□ -2.2
MSH2P43246 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.31□□□□□ -2.2
MSH2P43246 Y_RNA.14-201ENST00000362415 103 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.82-201ENST00000363000 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.92-201ENST00000363043 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.235-201ENST00000364412 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.306-201ENST00000365015 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.312-201ENST00000365089 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.322-201ENST00000365151 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 RNU6-442P-201ENST00000383968 104 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.556-201ENST00000384677 113 ntBASIC1.3□□□□□ -2.2
MSH2P43246 MIR618-201ENST00000385287 98 ntBASIC1.3□□□□□ -2.2
MSH2P43246 MIR526A2-201ENST00000390198 65 ntBASIC1.3□□□□□ -2.2
MSH2P43246 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.3□□□□□ -2.2
MSH2P43246 MIR1302-3-201ENST00000408128 138 ntBASIC1.3□□□□□ -2.2
MSH2P43246 RNU6-651P-201ENST00000411040 105 ntBASIC1.3□□□□□ -2.2
MSH2P43246 SNORD2.1-201ENST00000458762 69 ntBASIC1.3□□□□□ -2.2
MSH2P43246 RNU1-123P-201ENST00000458950 160 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.650-201ENST00000459002 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.777-201ENST00000516982 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 MIR5688-201ENST00000580619 83 ntBASIC1.3□□□□□ -2.2
MSH2P43246 AC012433.1-201ENST00000588916 398 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.771-201ENST00000598668 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.802-201ENST00000614892 130 ntBASIC1.3□□□□□ -2.2
MSH2P43246 Y_RNA.789-201ENST00000622480 102 ntBASIC1.3□□□□□ -2.2
MSH2P43246 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
MSH2P43246 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.29□□□□□ -2.2
MSH2P43246 RNU4-10P-201ENST00000364383 140 ntBASIC1.29□□□□□ -2.2
MSH2P43246 Y_RNA.288-201ENST00000364854 92 ntBASIC1.29□□□□□ -2.2
MSH2P43246 Y_RNA.352-201ENST00000365439 102 ntBASIC1.29□□□□□ -2.2
MSH2P43246 MIR802-201ENST00000390235 94 ntBASIC1.29□□□□□ -2.2
MSH2P43246 SNORD72-201ENST00000390994 80 ntBASIC1.29□□□□□ -2.2
MSH2P43246 AL603910.2-201ENST00000407268 136 ntBASIC1.29□□□□□ -2.2
MSH2P43246 RNU2-38P-201ENST00000410856 79 ntBASIC1.29□□□□□ -2.2
MSH2P43246 SNRPGP14-201ENST00000435400 219 ntBASIC1.29□□□□□ -2.2
MSH2P43246 AC023449.1-201ENST00000454464 154 ntBASIC1.29□□□□□ -2.2
MSH2P43246 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.29□□□□□ -2.2
MSH2P43246 RPS29P29-201ENST00000456396 171 ntBASIC1.29□□□□□ -2.2
MSH2P43246 SNORD127-201ENST00000458892 86 ntBASIC1.29□□□□□ -2.2
MSH2P43246 RNU7-95P-201ENST00000459222 64 ntBASIC1.29□□□□□ -2.2
MSH2P43246 AC090821.2-201ENST00000523552 176 ntBASIC1.29□□□□□ -2.2
MSH2P43246 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.29□□□□□ -2.2
MSH2P43246 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.29□□□□□ -2.2
MSH2P43246 AL442644.1-201ENST00000454390 3105 ntBASIC1.29□□□□□ -2.2
MSH2P43246 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
MSH2P43246 Y_RNA.242-201ENST00000364473 110 ntBASIC1.28□□□□□ -2.2
MSH2P43246 SNORA25-201ENST00000384384 134 ntBASIC1.28□□□□□ -2.2
MSH2P43246 MIR15B-201ENST00000385045 98 ntBASIC1.28□□□□□ -2.2
MSH2P43246 AP1B1P2-201ENST00000416196 106 ntBASIC1.28□□□□□ -2.2
MSH2P43246 MTND3P2-201ENST00000438452 342 ntBASIC1.28□□□□□ -2.2
MSH2P43246 MIR4282-201ENST00000583613 67 ntBASIC1.28□□□□□ -2.2
MSH2P43246 uc_338.4-201ENST00000616635 176 ntBASIC1.28□□□□□ -2.2
MSH2P43246 RNU6-268P-201ENST00000364174 107 ntBASIC1.27□□□□□ -2.21
MSH2P43246 SNORD38C-201ENST00000384381 69 ntBASIC1.27□□□□□ -2.21
MSH2P43246 SNORA8.3-201ENST00000384679 139 ntBASIC1.27□□□□□ -2.21
MSH2P43246 MIR222-201ENST00000384992 110 ntBASIC1.27□□□□□ -2.21
MSH2P43246 Y_RNA.590-201ENST00000410140 107 ntBASIC1.27□□□□□ -2.21
MSH2P43246 AC245047.8-201ENST00000456455 284 ntBASIC1.27□□□□□ -2.21
MSH2P43246 RNU6-947P-201ENST00000516264 106 ntBASIC1.27□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms