Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNU7-30P-201ENST00000516835 62 ntBASIC0.23□□□□□ -2.37
USF1P22415 MIR5188-201ENST00000583467 113 ntBASIC0.23□□□□□ -2.37
USF1P22415 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.23□□□□□ -2.37
USF1P22415 AC011476.5-201ENST00000615594 130 ntBASIC0.23□□□□□ -2.37
USF1P22415 RNU4-67P-201ENST00000364569 141 ntBASIC0.22□□□□□ -2.37
USF1P22415 AC005042.3-201ENST00000453230 174 ntBASIC0.22□□□□□ -2.37
USF1P22415 Y_RNA.635-201ENST00000459041 101 ntBASIC0.22□□□□□ -2.37
USF1P22415 RNU7-169P-201ENST00000459456 61 ntBASIC0.22□□□□□ -2.37
USF1P22415 RNU6-911P-201ENST00000516523 104 ntBASIC0.22□□□□□ -2.37
USF1P22415 RNU6-358P-201ENST00000516564 75 ntBASIC0.22□□□□□ -2.37
USF1P22415 AC024405.2-202ENST00000532731 184 ntBASIC0.22□□□□□ -2.37
USF1P22415 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.22□□□□□ -2.37
USF1P22415 AL162730.1-201ENST00000605734 292 ntBASIC0.22□□□□□ -2.37
USF1P22415 MIR4791-201ENST00000607666 84 ntBASIC0.22□□□□□ -2.37
USF1P22415 MTND1P7-201ENST00000632801 297 ntBASIC0.22□□□□□ -2.37
USF1P22415 RNU6-1209P-201ENST00000363655 107 ntBASIC0.21□□□□□ -2.38
USF1P22415 Y_RNA.242-201ENST00000364473 110 ntBASIC0.21□□□□□ -2.38
USF1P22415 RNU6-1175P-201ENST00000365200 107 ntBASIC0.21□□□□□ -2.38
USF1P22415 RNU6-1327P-201ENST00000365302 105 ntBASIC0.21□□□□□ -2.38
USF1P22415 MTCO2P33-201ENST00000402100 465 ntBASIC0.21□□□□□ -2.38
USF1P22415 Y_RNA.646-201ENST00000410980 101 ntBASIC0.21□□□□□ -2.38
USF1P22415 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.21□□□□□ -2.38
USF1P22415 AC024067.1-201ENST00000426199 223 ntBASIC0.21□□□□□ -2.38
USF1P22415 MTCO3P10-201ENST00000455912 772 ntBASIC0.21□□□□□ -2.38
USF1P22415 NDUFA4P2-201ENST00000489989 244 ntBASIC0.21□□□□□ -2.38
USF1P22415 RPL23AP54-201ENST00000495129 419 ntBASIC0.21□□□□□ -2.38
USF1P22415 RNU7-181P-201ENST00000517234 74 ntBASIC0.21□□□□□ -2.38
USF1P22415 AC127455.1-201ENST00000565496 145 ntBASIC0.21□□□□□ -2.38
USF1P22415 MIR3612-201ENST00000579753 87 ntBASIC0.21□□□□□ -2.38
USF1P22415 MIR2681-201ENST00000581814 105 ntBASIC0.21□□□□□ -2.38
USF1P22415 MIR4264-201ENST00000583520 66 ntBASIC0.21□□□□□ -2.38
USF1P22415 MIR5690-201ENST00000583739 73 ntBASIC0.21□□□□□ -2.38
USF1P22415 U2.1-201ENST00000618978 145 ntBASIC0.21□□□□□ -2.38
USF1P22415 AC098679.4-201ENST00000624241 654 ntBASIC0.21□□□□□ -2.38
USF1P22415 TPTEP1-208ENST00000636884 213 ntBASIC0.21□□□□□ -2.38
USF1P22415 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.2□□□□□ -2.38
USF1P22415 Y_RNA.68-201ENST00000362881 102 ntBASIC0.2□□□□□ -2.38
USF1P22415 SNORD45.3-201ENST00000363836 72 ntBASIC0.2□□□□□ -2.38
USF1P22415 RNU6-310P-201ENST00000384655 107 ntBASIC0.2□□□□□ -2.38
USF1P22415 Y_RNA.570-201ENST00000384750 101 ntBASIC0.2□□□□□ -2.38
USF1P22415 MIR628-201ENST00000385229 95 ntBASIC0.2□□□□□ -2.38
USF1P22415 RNU4-14P-201ENST00000410858 122 ntBASIC0.2□□□□□ -2.38
USF1P22415 RNU6-847P-201ENST00000411115 108 ntBASIC0.2□□□□□ -2.38
USF1P22415 AL589823.1-201ENST00000429577 183 ntBASIC0.2□□□□□ -2.38
USF1P22415 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.2□□□□□ -2.38
USF1P22415 snoU13.21-201ENST00000459368 105 ntBASIC0.2□□□□□ -2.38
USF1P22415 RNU7-115P-201ENST00000516433 55 ntBASIC0.2□□□□□ -2.38
USF1P22415 RNU6-1007P-201ENST00000516586 107 ntBASIC0.2□□□□□ -2.38
USF1P22415 Y_RNA.691-201ENST00000516611 103 ntBASIC0.2□□□□□ -2.38
USF1P22415 AC008507.4-201ENST00000585464 127 ntBASIC0.2□□□□□ -2.38
USF1P22415 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
USF1P22415 uc_338.4-201ENST00000616635 176 ntBASIC0.2□□□□□ -2.38
USF1P22415 MIR2909-201ENST00000617113 69 ntBASIC0.2□□□□□ -2.38
USF1P22415 AC092634.7-201ENST00000621022 103 ntBASIC0.2□□□□□ -2.38
USF1P22415 Y_RNA.6-201ENST00000362350 114 ntBASIC0.19□□□□□ -2.38
USF1P22415 Y_RNA.27-201ENST00000362540 103 ntBASIC0.19□□□□□ -2.38
USF1P22415 RNU6-1188P-201ENST00000363795 107 ntBASIC0.19□□□□□ -2.38
USF1P22415 RNY3P11-201ENST00000364153 102 ntBASIC0.19□□□□□ -2.38
USF1P22415 RNU6-205P-201ENST00000390858 107 ntBASIC0.19□□□□□ -2.38
USF1P22415 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.19□□□□□ -2.38
USF1P22415 RNU6-370P-201ENST00000411008 104 ntBASIC0.19□□□□□ -2.38
USF1P22415 SNORD83.1-201ENST00000411362 77 ntBASIC0.19□□□□□ -2.38
USF1P22415 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.19□□□□□ -2.38
USF1P22415 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.19□□□□□ -2.38
USF1P22415 AC069439.1-201ENST00000494739 167 ntBASIC0.19□□□□□ -2.38
USF1P22415 AC108740.1-201ENST00000498629 225 ntBASIC0.19□□□□□ -2.38
USF1P22415 AC091951.2-201ENST00000500762 203 ntBASIC0.19□□□□□ -2.38
USF1P22415 RNU2-13P-201ENST00000515909 113 ntBASIC0.19□□□□□ -2.38
USF1P22415 MIR4771-2-201ENST00000577758 74 ntBASIC0.19□□□□□ -2.38
USF1P22415 MIR4804-201ENST00000581683 73 ntBASIC0.19□□□□□ -2.38
USF1P22415 MIR4771-1-201ENST00000582617 74 ntBASIC0.19□□□□□ -2.38
USF1P22415 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
USF1P22415 AC006441.5-201ENST00000612680 209 ntBASIC0.19□□□□□ -2.38
USF1P22415 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.19□□□□□ -2.38
USF1P22415 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.19□□□□□ -2.38
USF1P22415 RNA5SP62-201ENST00000363457 110 ntBASIC0.18□□□□□ -2.38
USF1P22415 U8.7-201ENST00000364940 136 ntBASIC0.18□□□□□ -2.38
USF1P22415 SNORD116-4-201ENST00000384733 96 ntBASIC0.18□□□□□ -2.38
USF1P22415 AL590004.1-201ENST00000405321 300 ntBASIC0.18□□□□□ -2.38
USF1P22415 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.18□□□□□ -2.38
USF1P22415 LARP7P1-201ENST00000605576 316 ntBASIC0.18□□□□□ -2.38
USF1P22415 MIR548AY-201ENST00000617669 107 ntBASIC0.18□□□□□ -2.38
USF1P22415 U6.92-201ENST00000636464 89 ntBASIC0.18□□□□□ -2.38
USF1P22415 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.17□□□□□ -2.38
USF1P22415 Y_RNA.166-201ENST00000363730 102 ntBASIC0.17□□□□□ -2.38
USF1P22415 Y_RNA.280-201ENST00000364765 112 ntBASIC0.17□□□□□ -2.38
USF1P22415 Y_RNA.314-201ENST00000365114 102 ntBASIC0.17□□□□□ -2.38
USF1P22415 Y_RNA.318-201ENST00000365131 97 ntBASIC0.17□□□□□ -2.38
USF1P22415 RNU6-890P-201ENST00000384121 107 ntBASIC0.17□□□□□ -2.38
USF1P22415 RNU6-125P-201ENST00000384505 107 ntBASIC0.17□□□□□ -2.38
USF1P22415 Y_RNA.599-201ENST00000410489 109 ntBASIC0.17□□□□□ -2.38
USF1P22415 AF228730.4-201ENST00000421457 183 ntBASIC0.17□□□□□ -2.38
USF1P22415 MTND1P34-201ENST00000438556 671 ntBASIC0.17□□□□□ -2.38
USF1P22415 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.17□□□□□ -2.38
USF1P22415 MIR4423-201ENST00000580922 80 ntBASIC0.17□□□□□ -2.38
USF1P22415 MIR4676-201ENST00000583078 72 ntBASIC0.17□□□□□ -2.38
USF1P22415 RNU6-845P-201ENST00000362578 103 ntBASIC0.16□□□□□ -2.38
USF1P22415 Y_RNA.331-201ENST00000365267 102 ntBASIC0.16□□□□□ -2.38
USF1P22415 HMGN1P33-201ENST00000432945 451 ntBASIC0.16□□□□□ -2.38
USF1P22415 AC099799.1-201ENST00000439809 192 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 136.3 ms