Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.3□□□□□ -2.36
CPSF4O95639 RPL23AP91-201ENST00000569211 455 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 MIR4791-201ENST00000607666 84 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 AC084781.2-201ENST00000615568 161 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 AC015726.2-201ENST00000620112 122 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 MTND1P7-201ENST00000632801 297 ntBASIC0.3□□□□□ -2.36
CPSF4O95639 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.29□□□□□ -2.36
CPSF4O95639 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.29□□□□□ -2.36
CPSF4O95639 RNU6-1048P-201ENST00000364054 107 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 Y_RNA.384-201ENST00000383909 102 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 RNU6-937P-201ENST00000384325 106 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 Y_RNA.537-201ENST00000384626 109 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 Y_RNA.551-201ENST00000384661 102 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 MIR499A-201ENST00000384903 122 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 AL603910.2-201ENST00000407268 136 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 SNORA36B-201ENST00000410438 131 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 RNU2-14P-201ENST00000411053 191 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 RNA5SP247-201ENST00000411181 105 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 MTND1P14-201ENST00000427400 950 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 RNU7-141P-201ENST00000459304 62 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 snoU13.21-201ENST00000459368 105 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 RNU6-437P-201ENST00000459408 95 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 MIR2681-201ENST00000581814 105 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 AC092447.9-201ENST00000603395 144 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 AL080274.1-201ENST00000605565 220 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 AL121655.1-201ENST00000605811 308 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 AC104985.2-201ENST00000620598 500 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 MIR1302-1-201ENST00000637932 143 ntBASIC0.29□□□□□ -2.36
CPSF4O95639 SNORD45.3-201ENST00000363836 72 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 Y_RNA.224-201ENST00000364308 111 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 RNU4-50P-201ENST00000364361 141 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 RNU6-580P-201ENST00000365159 107 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 RNU6-205P-201ENST00000390858 107 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 RNU4-77P-201ENST00000516692 156 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 Z83818.1-201ENST00000603584 150 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 AC243829.6-201ENST00000612652 106 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 AC006441.5-201ENST00000612680 209 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 RMST_2.1-201ENST00000617263 136 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 AC099654.14-201ENST00000638599 341 ntBASIC0.28□□□□□ -2.36
CPSF4O95639 RNU6-1115P-201ENST00000362490 106 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.39-201ENST00000362620 98 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.80-201ENST00000362996 102 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.143-201ENST00000363520 106 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 RNU6-674P-201ENST00000363831 107 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.187-201ENST00000363918 113 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 RNU6-801P-201ENST00000364087 105 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 SNORA1.2-201ENST00000365189 134 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.376-201ENST00000365638 108 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.390-201ENST00000383932 102 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 SNORA72.4-201ENST00000384174 132 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 SNORA50A-201ENST00000384225 134 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 SNORD63-201ENST00000384262 68 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.485-201ENST00000384395 102 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.505-201ENST00000384489 102 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 RNU6-21P-201ENST00000384710 107 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 RNU6-177P-201ENST00000411257 104 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 AC015818.7-201ENST00000428754 109 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 AC087499.7-201ENST00000441958 109 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 RNU7-152P-201ENST00000458982 64 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 SNORD11-201ENST00000459124 84 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 RNU2-13P-201ENST00000515909 113 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 Y_RNA.661-201ENST00000516003 99 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 AC005357.1-201ENST00000588399 301 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 RPS29P30-201ENST00000600975 111 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 AL078603.1-201ENST00000603824 313 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 SNORD58B-201ENST00000607313 66 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 AL132765.2-201ENST00000610812 351 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 MIR6513-201ENST00000621188 64 ntBASIC0.27□□□□□ -2.37
CPSF4O95639 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.26□□□□□ -2.37
CPSF4O95639 MIR377-201ENST00000362145 69 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 RNU4-80P-201ENST00000363200 141 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 Y_RNA.813-201ENST00000364639 102 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 Y_RNA.286-201ENST00000364813 102 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 RNU6-934P-201ENST00000365154 107 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 Y_RNA.383-201ENST00000383855 97 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 Y_RNA.439-201ENST00000384119 94 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 RNU6-125P-201ENST00000384505 107 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 MIR573-201ENST00000384964 99 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 MIR520H-201ENST00000385126 88 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 MIR140-201ENST00000385282 100 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 MT-TN-201ENST00000387400 73 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 SNORA26.5-201ENST00000391215 123 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 RNU6-847P-201ENST00000411115 108 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 SNORD83.1-201ENST00000411362 77 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 AL160004.2-201ENST00000432935 350 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 RBMX2P4-201ENST00000441256 376 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 Y_RNA.632-201ENST00000459189 102 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 SCARNA8-201ENST00000515924 131 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 RN7SKP12-201ENST00000516275 143 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.26□□□□□ -2.37
CPSF4O95639 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.26□□□□□ -2.37
CPSF4O95639 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.26□□□□□ -2.37
CPSF4O95639 AP000753.3-201ENST00000604083 169 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 AL606534.2-204ENST00000635008 178 ntBASIC0.26□□□□□ -2.37
CPSF4O95639 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.26□□□□□ -2.37
CPSF4O95639 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms