Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 RNU6-268P-201ENST00000364174 107 ntBASIC1.08□□□□□ -2.24
SNX3O60493 Y_RNA.237-201ENST00000364439 102 ntBASIC1.08□□□□□ -2.24
SNX3O60493 Y_RNA.293-201ENST00000364908 93 ntBASIC1.08□□□□□ -2.24
SNX3O60493 SNORA22-201ENST00000383907 134 ntBASIC1.08□□□□□ -2.24
SNX3O60493 SNORD38C-201ENST00000384381 69 ntBASIC1.08□□□□□ -2.24
SNX3O60493 SNORA22C-201ENST00000384614 134 ntBASIC1.08□□□□□ -2.24
SNX3O60493 MIR222-201ENST00000384992 110 ntBASIC1.08□□□□□ -2.24
SNX3O60493 MIR15B-201ENST00000385045 98 ntBASIC1.08□□□□□ -2.24
SNX3O60493 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
SNX3O60493 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.08□□□□□ -2.24
SNX3O60493 AL591806.2-201ENST00000433122 173 ntBASIC1.08□□□□□ -2.24
SNX3O60493 RNU7-41P-201ENST00000515917 61 ntBASIC1.08□□□□□ -2.24
SNX3O60493 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.08□□□□□ -2.24
SNX3O60493 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.08□□□□□ -2.24
SNX3O60493 MIR4764-201ENST00000580680 88 ntBASIC1.08□□□□□ -2.24
SNX3O60493 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
SNX3O60493 Y_RNA.275-201ENST00000364726 110 ntBASIC1.07□□□□□ -2.24
SNX3O60493 MIR618-201ENST00000385287 98 ntBASIC1.07□□□□□ -2.24
SNX3O60493 MIR548F4-201ENST00000408515 105 ntBASIC1.07□□□□□ -2.24
SNX3O60493 RNU7-40P-201ENST00000516397 64 ntBASIC1.07□□□□□ -2.24
SNX3O60493 RNU6-1007P-201ENST00000516586 107 ntBASIC1.07□□□□□ -2.24
SNX3O60493 RNA5SP404-201ENST00000517118 132 ntBASIC1.07□□□□□ -2.24
SNX3O60493 AC008737.2-201ENST00000599446 118 ntBASIC1.07□□□□□ -2.24
SNX3O60493 AL021707.8-201ENST00000609428 183 ntBASIC1.07□□□□□ -2.24
SNX3O60493 AL391903.3-201ENST00000612158 163 ntBASIC1.07□□□□□ -2.24
SNX3O60493 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SNX3O60493 AL391987.6-201ENST00000305671 199 ntBASIC1.06□□□□□ -2.24
SNX3O60493 MIR367-201ENST00000362299 68 ntBASIC1.06□□□□□ -2.24
SNX3O60493 Y_RNA.14-201ENST00000362415 103 ntBASIC1.06□□□□□ -2.24
SNX3O60493 Y_RNA.117-201ENST00000363294 101 ntBASIC1.06□□□□□ -2.24
SNX3O60493 Y_RNA.145-201ENST00000363527 102 ntBASIC1.06□□□□□ -2.24
SNX3O60493 RNU4-10P-201ENST00000364383 140 ntBASIC1.06□□□□□ -2.24
SNX3O60493 RNU6-211P-201ENST00000384047 107 ntBASIC1.06□□□□□ -2.24
SNX3O60493 RNU6-1289P-201ENST00000384431 106 ntBASIC1.06□□□□□ -2.24
SNX3O60493 RNU6-939P-201ENST00000384634 107 ntBASIC1.06□□□□□ -2.24
SNX3O60493 MT-TW-201ENST00000387382 68 ntBASIC1.06□□□□□ -2.24
SNX3O60493 MIR764-201ENST00000390811 85 ntBASIC1.06□□□□□ -2.24
SNX3O60493 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.06□□□□□ -2.24
SNX3O60493 AC245047.8-201ENST00000456455 284 ntBASIC1.06□□□□□ -2.24
SNX3O60493 RNU1-92P-201ENST00000517017 135 ntBASIC1.06□□□□□ -2.24
SNX3O60493 MIR4724-201ENST00000579485 89 ntBASIC1.06□□□□□ -2.24
SNX3O60493 PRELID3BP2-201ENST00000605362 201 ntBASIC1.06□□□□□ -2.24
SNX3O60493 MIR8062-201ENST00000621515 85 ntBASIC1.06□□□□□ -2.24
SNX3O60493 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.06□□□□□ -2.24
SNX3O60493 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.05□□□□□ -2.24
SNX3O60493 Y_RNA.44-201ENST00000362676 108 ntBASIC1.05□□□□□ -2.24
SNX3O60493 Y_RNA.483-201ENST00000384380 101 ntBASIC1.05□□□□□ -2.24
SNX3O60493 RNU6-738P-201ENST00000384531 106 ntBASIC1.05□□□□□ -2.24
SNX3O60493 Y_RNA.574-201ENST00000384766 95 ntBASIC1.05□□□□□ -2.24
SNX3O60493 SNORD28B-201ENST00000390993 75 ntBASIC1.05□□□□□ -2.24
SNX3O60493 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.05□□□□□ -2.24
SNX3O60493 snoU13.23-201ENST00000458863 104 ntBASIC1.05□□□□□ -2.24
SNX3O60493 RPS26P48-201ENST00000491713 339 ntBASIC1.05□□□□□ -2.24
SNX3O60493 SNORD79.1-201ENST00000516069 84 ntBASIC1.05□□□□□ -2.24
SNX3O60493 SNORD116-28-201ENST00000516123 91 ntBASIC1.05□□□□□ -2.24
SNX3O60493 RNU7-43P-201ENST00000516554 64 ntBASIC1.05□□□□□ -2.24
SNX3O60493 MIR548AR-201ENST00000582191 57 ntBASIC1.05□□□□□ -2.24
SNX3O60493 AL049861.1-201ENST00000603130 150 ntBASIC1.05□□□□□ -2.24
SNX3O60493 AL512598.1-201ENST00000610158 273 ntBASIC1.05□□□□□ -2.24
SNX3O60493 AC006441.5-201ENST00000612680 209 ntBASIC1.05□□□□□ -2.24
SNX3O60493 Pinc.1-201ENST00000616452 154 ntBASIC1.05□□□□□ -2.24
SNX3O60493 uc_338.4-201ENST00000616635 176 ntBASIC1.05□□□□□ -2.24
SNX3O60493 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.05□□□□□ -2.24
SNX3O60493 RNU6-740P-201ENST00000364734 105 ntBASIC1.04□□□□□ -2.24
SNX3O60493 Y_RNA.461-201ENST00000384263 103 ntBASIC1.04□□□□□ -2.24
SNX3O60493 SNORA17.3-201ENST00000391159 129 ntBASIC1.04□□□□□ -2.24
SNX3O60493 RNA5SP496-201ENST00000391240 109 ntBASIC1.04□□□□□ -2.24
SNX3O60493 MIR1302-6-201ENST00000408466 90 ntBASIC1.04□□□□□ -2.24
SNX3O60493 AC023449.1-201ENST00000454464 154 ntBASIC1.04□□□□□ -2.24
SNX3O60493 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.04□□□□□ -2.24
SNX3O60493 RN7SKP164-201ENST00000516138 266 ntBASIC1.04□□□□□ -2.24
SNX3O60493 RNU6-830P-201ENST00000516353 107 ntBASIC1.04□□□□□ -2.24
SNX3O60493 RNU7-149P-201ENST00000516739 59 ntBASIC1.04□□□□□ -2.24
SNX3O60493 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.04□□□□□ -2.24
SNX3O60493 AL117187.1-201ENST00000555482 181 ntBASIC1.04□□□□□ -2.24
SNX3O60493 Y_RNA.802-201ENST00000614892 130 ntBASIC1.04□□□□□ -2.24
SNX3O60493 AC015726.2-201ENST00000620112 122 ntBASIC1.04□□□□□ -2.24
SNX3O60493 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.04□□□□□ -2.24
SNX3O60493 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.03□□□□□ -2.24
SNX3O60493 SNORA25.3-201ENST00000363205 127 ntBASIC1.03□□□□□ -2.24
SNX3O60493 SNORA80D-201ENST00000384488 135 ntBASIC1.03□□□□□ -2.24
SNX3O60493 MIR526A2-201ENST00000390198 65 ntBASIC1.03□□□□□ -2.24
SNX3O60493 SNORA75.2-201ENST00000391138 150 ntBASIC1.03□□□□□ -2.24
SNX3O60493 SNORA75.3-201ENST00000391231 150 ntBASIC1.03□□□□□ -2.24
SNX3O60493 RNU6-651P-201ENST00000411040 105 ntBASIC1.03□□□□□ -2.24
SNX3O60493 MIR4421-201ENST00000578133 69 ntBASIC1.03□□□□□ -2.24
SNX3O60493 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.03□□□□□ -2.24
SNX3O60493 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.02□□□□□ -2.25
SNX3O60493 MIR335-201ENST00000362173 94 ntBASIC1.02□□□□□ -2.25
SNX3O60493 RNA5SP264-201ENST00000363115 107 ntBASIC1.02□□□□□ -2.25
SNX3O60493 Y_RNA.176-201ENST00000363815 109 ntBASIC1.02□□□□□ -2.25
SNX3O60493 RNU1-124P-201ENST00000363861 145 ntBASIC1.02□□□□□ -2.25
SNX3O60493 Y_RNA.242-201ENST00000364473 110 ntBASIC1.02□□□□□ -2.25
SNX3O60493 Y_RNA.459-201ENST00000384251 102 ntBASIC1.02□□□□□ -2.25
SNX3O60493 RNU6-472P-201ENST00000384299 107 ntBASIC1.02□□□□□ -2.25
SNX3O60493 Y_RNA.572-201ENST00000384757 98 ntBASIC1.02□□□□□ -2.25
SNX3O60493 SNORD12-201ENST00000391002 90 ntBASIC1.02□□□□□ -2.25
SNX3O60493 U8.17-201ENST00000391292 132 ntBASIC1.02□□□□□ -2.25
SNX3O60493 AC063976.4-201ENST00000421971 163 ntBASIC1.02□□□□□ -2.25
SNX3O60493 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms