Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 MIR938-201ENST00000401216 83 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 RNU6-847P-201ENST00000411115 108 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 RNA5SP247-201ENST00000411181 105 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 MCFD2P1-201ENST00000417812 300 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AC090844.1-201ENST00000422019 156 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AC107399.1-201ENST00000451226 265 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AC091959.1-201ENST00000495857 238 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 RNU6-863P-201ENST00000515989 104 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AC069113.3-201ENST00000521019 150 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AC024405.2-202ENST00000532731 184 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 MIR5188-201ENST00000583467 113 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 POLR3GP1-201ENST00000594073 261 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AP003357.1-201ENST00000604497 148 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 uc_338.16-201ENST00000621804 95 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AL359757.2-201ENST00000624309 274 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 MIR4315-1-201ENST00000636800 73 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 MIR4315-2-201ENST00000640925 73 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 AL589743.1-201ENST00000551932 2712 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.88-201ENST00000363029 99 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 RNU6-626P-201ENST00000363354 107 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 SNORA42.1-201ENST00000363515 137 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 RNU1-133P-201ENST00000364867 167 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
VCX3AQ9NNX9 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.573-201ENST00000384763 105 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 MIR625-201ENST00000385047 85 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 AL590004.1-201ENST00000405321 300 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 RNU6-710P-201ENST00000410424 105 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 RPL23AP54-201ENST00000495129 419 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 RNU6-1223P-201ENST00000517124 104 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 AC024909.2-201ENST00000553035 286 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0□□□□□ -2.41
VCX3AQ9NNX9 AC127455.1-201ENST00000565496 145 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 AC090897.1-201ENST00000580909 226 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 AC008608.1-201ENST00000603910 127 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 RAC1P9-201ENST00000604990 392 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 AC022441.3-201ENST00000605737 136 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 PISRT1.1-201ENST00000616930 107 ntBASIC0□□□□□ -2.41
VCX3AQ9NNX9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.341-201ENST00000365341 102 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.577-201ENST00000384794 101 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 SNORD72-201ENST00000390994 80 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 SNORA75.4-201ENST00000391278 119 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 AL603910.2-201ENST00000407268 136 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 MTND1P2-201ENST00000430604 821 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 RNU6-237P-201ENST00000515985 71 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 AC006441.5-201ENST00000612680 209 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 AC011476.5-201ENST00000615594 130 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 MIR924-201ENST00000638017 53 ntBASIC-0.01□□□□□ -2.41
VCX3AQ9NNX9 AC010332.2-201ENST00000613083 1904 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.230-201ENST00000364348 109 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 SNORA63C-201ENST00000364578 129 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.456-201ENST00000384232 111 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU6-510P-201ENST00000391239 108 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU6-1156P-201ENST00000410365 100 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 MTND3P8-201ENST00000412909 339 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 AF228730.4-201ENST00000421457 183 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU7-102P-201ENST00000458948 62 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 snoU13.16-201ENST00000459350 104 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU6-470P-201ENST00000515954 104 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU6-120P-201ENST00000516077 103 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU7-115P-201ENST00000516433 55 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU6-1213P-201ENST00000517075 94 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 AC112693.2-201ENST00000556538 232 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 MIR548AY-201ENST00000617669 107 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 MIR6740-201ENST00000618268 113 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 AL669831.3-213ENST00000636676 183 ntBASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.02□□□□□ -2.41
VCX3AQ9NNX9 SNORA24-201ENST00000384096 131 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 RNA5SP193-201ENST00000410353 107 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 AL603825.1-201ENST00000438481 80 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 AC091951.2-201ENST00000500762 203 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 RN7SKP295-201ENST00000517264 153 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 EIF1P4-201ENST00000572664 335 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 MIR4659A-201ENST00000580269 81 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 AC005730.3-201ENST00000583067 366 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 AC134878.1-201ENST00000619901 243 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 MIR3688-2-201ENST00000636963 87 ntBASIC-0.03□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.86-201ENST00000363020 111 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 RNU4-24P-201ENST00000364565 139 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 SNORA25.9-201ENST00000365087 128 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 RNU6-1175P-201ENST00000365200 107 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 SNORD116-2-201ENST00000384274 95 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 RNU6-364P-201ENST00000384387 107 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 SNORD116-6-201ENST00000384711 96 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 Y_RNA.570-201ENST00000384750 101 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 MIR125B2-201ENST00000385128 89 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 SNORA75.6-201ENST00000391318 127 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 AC005042.3-201ENST00000453230 174 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 PRDX4P1-201ENST00000507189 574 ntBASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-0.04□□□□□ -2.42
VCX3AQ9NNX9 MIR3678-201ENST00000578455 94 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms