Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 MIR8065-201ENST00000620577 100 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 AL391987.6-201ENST00000305671 199 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 MIR26B-201ENST00000362251 77 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.117-201ENST00000363294 101 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 SNORD14E-201ENST00000364009 85 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.459-201ENST00000384251 102 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 RNU6-1289P-201ENST00000384431 106 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 SNORD72-201ENST00000390994 80 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 SNORA67.6-201ENST00000391093 99 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 AL603910.2-201ENST00000407268 136 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 AL358176.2-201ENST00000425769 204 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 RNU6-947P-201ENST00000516264 106 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 AL357312.1-201ENST00000603879 298 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 AL096861.1-201ENST00000610899 123 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.25□□□□□ -2.21
CHMP1AQ9HD42 RNU6-211P-201ENST00000384047 107 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.461-201ENST00000384263 103 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.518-201ENST00000384552 113 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 MIR136-201ENST00000385207 82 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 AL354695.1-201ENST00000427935 228 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 SNRPGP13-201ENST00000442212 177 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 snoU13.25-201ENST00000458945 104 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 AC048334.1-201ENST00000477975 159 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 MIR4719-201ENST00000585233 84 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 AL021707.8-201ENST00000609428 183 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 AC007742.2-201ENST00000618226 398 ntBASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.176-201ENST00000363815 109 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 RNU4-10P-201ENST00000364383 140 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 RNU6-740P-201ENST00000364734 105 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.396-201ENST00000383949 103 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 MIR1323-201ENST00000408090 73 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 MIR1302-6-201ENST00000408466 90 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 RNU6-651P-201ENST00000411040 105 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 RNU6-1054P-201ENST00000411293 104 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 MTND2P23-201ENST00000422990 651 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 SNORA74.3-201ENST00000517108 154 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 SNORA31.24-201ENST00000517232 57 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 MIR4513-201ENST00000581077 86 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 MIR3192-201ENST00000584920 77 ntBASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.23□□□□□ -2.21
CHMP1AQ9HD42 MIR335-201ENST00000362173 94 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.44-201ENST00000362676 108 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.47-201ENST00000362697 108 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 RNU6-1309P-201ENST00000363305 108 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 RNU6-268P-201ENST00000364174 107 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.293-201ENST00000364908 93 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 RNU6-442P-201ENST00000383968 104 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 AC245047.8-201ENST00000456455 284 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 AL133373.1-201ENST00000497098 94 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 SNORA31.2-201ENST00000516019 134 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 RNU6-327P-201ENST00000516270 127 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 SNORD111.1-201ENST00000516421 86 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 RNA5SP61-201ENST00000516453 100 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 AC019288.1-201ENST00000557918 224 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 U2.14-201ENST00000615943 113 ntBASIC1.22□□□□□ -2.21
CHMP1AQ9HD42 AC245047.7-201ENST00000440265 293 ntBASIC1.21□□□□□ -2.22
CHMP1AQ9HD42 SNORA18.7-201ENST00000516910 131 ntBASIC1.21□□□□□ -2.22
CHMP1AQ9HD42 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.21□□□□□ -2.22
CHMP1AQ9HD42 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.21□□□□□ -2.22
CHMP1AQ9HD42 MIR4724-201ENST00000579485 89 ntBASIC1.21□□□□□ -2.22
CHMP1AQ9HD42 MIR367-201ENST00000362299 68 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 RNA5SP190-201ENST00000365222 118 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.363-201ENST00000365529 113 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 MIR526A2-201ENST00000390198 65 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 RNA5SP496-201ENST00000391240 109 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 RPL39P39-201ENST00000455840 151 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 SNORA59A-201ENST00000459326 152 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 SNORD123-201ENST00000459473 70 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 MIR4255-201ENST00000579351 72 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 AL049861.1-201ENST00000603130 150 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 AC099654.10-201ENST00000640395 161 ntBASIC1.2□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.133-201ENST00000363428 110 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.149-201ENST00000363558 117 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.162-201ENST00000363683 102 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 RNA5SP126-201ENST00000365092 109 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.572-201ENST00000384757 98 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 MIR568-201ENST00000385036 95 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 MIR802-201ENST00000390235 94 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 SNORA26.9-201ENST00000391322 122 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 AL078595.1-201ENST00000404458 226 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 SNORD2.1-201ENST00000458762 69 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 RNU7-41P-201ENST00000515917 61 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 AL022345.2-201ENST00000606307 135 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 AC006441.5-201ENST00000612680 209 ntBASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
CHMP1AQ9HD42 Y_RNA.802-201ENST00000614892 130 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 340.8 ms