Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR373-201ENST00000362273 69 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 SNORA25.3-201ENST00000363205 127 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.456-201ENST00000384232 111 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 MIR518E-201ENST00000385252 88 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.579-201ENST00000390939 94 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 U8.20-201ENST00000459445 131 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 AP003716.2-201ENST00000528260 108 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 AC024405.2-202ENST00000532731 184 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 MIR4795-201ENST00000584182 89 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 AL353765.1-201ENST00000605514 183 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 JPX_2.1-201ENST00000614161 69 ntBASIC1.11□□□□□ -2.23
CHMP4AQ9BY43 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.224-201ENST00000364308 111 ntBASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.269-201ENST00000364685 89 ntBASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.315-201ENST00000365117 102 ntBASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.368-201ENST00000365547 113 ntBASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.526-201ENST00000384572 110 ntBASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 AC004941.2-201ENST00000427009 228 ntBASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 MTND3P22-201ENST00000510932 243 ntBASIC1.1□□□□□ -2.23
CHMP4AQ9BY43 RNU4-73P-201ENST00000363164 141 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 SNORD14E-201ENST00000364009 85 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.471-201ENST00000384312 102 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 RNY1P14-201ENST00000384426 108 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 Y_RNA.551-201ENST00000384661 102 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 MIR802-201ENST00000390235 94 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 AC113410.1-201ENST00000505029 247 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 RNU7-41P-201ENST00000515917 61 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 RNU6-1110P-201ENST00000516462 101 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 AL078603.1-201ENST00000603824 313 ntBASIC1.09□□□□□ -2.23
CHMP4AQ9BY43 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.09□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.203-201ENST00000364106 102 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 RNU4-50P-201ENST00000364361 141 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 U8.7-201ENST00000364940 136 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 RNU6-1067P-201ENST00000384752 107 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 AC006461.1-201ENST00000412637 326 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 RNU6-351P-201ENST00000516097 100 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 RNA5SP220-201ENST00000516298 104 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.673-201ENST00000516306 88 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.713-201ENST00000517013 96 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 MIR4764-201ENST00000580680 88 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 FAM71BP1-201ENST00000604431 523 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 AP003357.1-201ENST00000604497 148 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 AC108706.1-201ENST00000611053 297 ntBASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.08□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.116-201ENST00000363292 103 ntBASIC1.07□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.122-201ENST00000363331 96 ntBASIC1.07□□□□□ -2.24
CHMP4AQ9BY43 RNY3P14-201ENST00000384309 102 ntBASIC1.07□□□□□ -2.24
CHMP4AQ9BY43 MIR520E-201ENST00000384867 87 ntBASIC1.07□□□□□ -2.24
CHMP4AQ9BY43 SNORD123-201ENST00000459473 70 ntBASIC1.07□□□□□ -2.24
CHMP4AQ9BY43 AC040926.1-201ENST00000530195 238 ntBASIC1.07□□□□□ -2.24
CHMP4AQ9BY43 MIR3973-201ENST00000579824 107 ntBASIC1.07□□□□□ -2.24
CHMP4AQ9BY43 MIR548AY-201ENST00000617669 107 ntBASIC1.07□□□□□ -2.24
CHMP4AQ9BY43 SNORD114-2-201ENST00000363953 78 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.197-201ENST00000364004 102 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 RNU6-42P-201ENST00000384165 107 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 SNORD63-201ENST00000384262 68 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 SNORD111-201ENST00000408139 94 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 POLR2KP2-201ENST00000438155 177 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 RNU7-115P-201ENST00000516433 55 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 AC127455.1-201ENST00000565496 145 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 AC007485.1-201ENST00000616755 206 ntBASIC1.06□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.148-201ENST00000363557 117 ntBASIC1.05□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.383-201ENST00000383855 97 ntBASIC1.05□□□□□ -2.24
CHMP4AQ9BY43 MIR100-201ENST00000385259 80 ntBASIC1.05□□□□□ -2.24
CHMP4AQ9BY43 HMGN1P10-201ENST00000474557 553 ntBASIC1.05□□□□□ -2.24
CHMP4AQ9BY43 RNU6-1007P-201ENST00000516586 107 ntBASIC1.05□□□□□ -2.24
CHMP4AQ9BY43 AC023827.1-201ENST00000569247 97 ntBASIC1.05□□□□□ -2.24
CHMP4AQ9BY43 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.05□□□□□ -2.24
CHMP4AQ9BY43 MIR6788-201ENST00000618842 66 ntBASIC1.05□□□□□ -2.24
CHMP4AQ9BY43 SNORD38C-201ENST00000384381 69 ntBASIC1.04□□□□□ -2.24
CHMP4AQ9BY43 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.04□□□□□ -2.24
CHMP4AQ9BY43 AC010655.3-201ENST00000478818 450 ntBASIC1.04□□□□□ -2.24
CHMP4AQ9BY43 AC131055.1-201ENST00000584626 316 ntBASIC1.04□□□□□ -2.24
CHMP4AQ9BY43 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 RNU4-80P-201ENST00000363200 141 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 RNU6-1209P-201ENST00000363655 107 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 RNU6-1048P-201ENST00000364054 107 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.813-201ENST00000364639 102 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 Y_RNA.424-201ENST00000384063 103 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 MT-TD-201ENST00000387419 68 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 SNORD89-201ENST00000390981 114 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 AC109810.1-201ENST00000534066 224 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 AL080274.1-201ENST00000605565 220 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 PART1_1.1-201ENST00000611761 217 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 AC106800.4-201ENST00000614905 153 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 MIR6866-201ENST00000638146 69 ntBASIC1.03□□□□□ -2.24
CHMP4AQ9BY43 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.03□□□□□ -2.25
CHMP4AQ9BY43 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 Y_RNA.286-201ENST00000364813 102 ntBASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 MIR1185-1-201ENST00000408598 86 ntBASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 MIR1278-201ENST00000408753 81 ntBASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 AL606490.4-201ENST00000423117 127 ntBASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 SEPT14P8-201ENST00000508026 178 ntBASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 RNU6-1170P-201ENST00000515974 106 ntBASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 CYP3A137P-201ENST00000562436 69 ntBASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 AL133255.1-201ENST00000606374 441 ntBASIC1.02□□□□□ -2.25
CHMP4AQ9BY43 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms