Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 HSBP1P2-201ENST00000299671 229 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 RNU4-73P-201ENST00000363164 141 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.112-201ENST00000363250 102 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 RNY3P14-201ENST00000384309 102 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.471-201ENST00000384312 102 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 RNU6-937P-201ENST00000384325 106 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 MIR942-201ENST00000401111 86 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 RPL23AP54-201ENST00000495129 419 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 RNU6-351P-201ENST00000516097 100 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 AC006157.1-201ENST00000611750 366 ntBASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.73□□□□□ -2.29
KLHDC3Q9BQ90 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 SNORD114-2-201ENST00000363953 78 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.579-201ENST00000390939 94 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 RNU6-1248P-201ENST00000391096 64 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 RNU4-30P-201ENST00000410245 143 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 SNORD123-201ENST00000459473 70 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 AC117454.1-201ENST00000491120 168 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 RNU7-41P-201ENST00000515917 61 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 AC040926.1-201ENST00000530195 238 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 MIR3145-201ENST00000580727 82 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 MIR4795-201ENST00000584182 89 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 AL080274.1-201ENST00000605565 220 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 SNORD113-5-201ENST00000607261 78 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.804-201ENST00000615262 101 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 SEPT14P17-201ENST00000617978 177 ntBASIC0.72□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.80-201ENST00000362996 102 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.143-201ENST00000363520 106 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.191-201ENST00000363972 113 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.238-201ENST00000364441 102 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 U8.7-201ENST00000364940 136 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-442P-201ENST00000383968 104 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 SNORD38C-201ENST00000384381 69 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.485-201ENST00000384395 102 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 MIR1302-11-201ENST00000408051 138 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 MIR1302-9-201ENST00000408365 138 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 MIR1302-10-201ENST00000408734 138 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 FABP5P4-201ENST00000437203 171 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 POLR2KP2-201ENST00000438155 177 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 MIR2681-201ENST00000581814 105 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 AL133255.1-201ENST00000606374 441 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 MIR1302-2-201ENST00000607096 138 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.71□□□□□ -2.3
KLHDC3Q9BQ90 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.796-201ENST00000364268 102 ntBASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.799-201ENST00000364992 102 ntBASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.383-201ENST00000383855 97 ntBASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.395-201ENST00000383945 109 ntBASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 MIR1185-1-201ENST00000408598 86 ntBASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 SEPT14P8-201ENST00000508026 178 ntBASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-1170P-201ENST00000515974 106 ntBASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 RN7SKP164-201ENST00000516138 266 ntBASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.7□□□□□ -2.3
KLHDC3Q9BQ90 SNORA25.3-201ENST00000363205 127 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-1209P-201ENST00000363655 107 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.242-201ENST00000364473 110 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.330-201ENST00000365230 109 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 SNORA63.7-201ENST00000365579 123 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 MIR802-201ENST00000390235 94 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-130P-201ENST00000411112 103 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RPS3AP1-201ENST00000413190 320 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-437P-201ENST00000459408 95 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 PSMC1P5-201ENST00000512850 177 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RNA5SP255-201ENST00000516370 107 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-1007P-201ENST00000516586 107 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RNU11-2P-201ENST00000516898 142 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 AC136628.3-201ENST00000521868 290 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 MIR4452-201ENST00000583004 71 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 LARP7P1-201ENST00000605576 316 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 PART1_1.1-201ENST00000611761 217 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 AC007485.1-201ENST00000616755 206 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 uc_338.22-201ENST00000622722 187 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 AC008133.2-201ENST00000624540 351 ntBASIC0.69□□□□□ -2.3
KLHDC3Q9BQ90 RNU4-80P-201ENST00000363200 141 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-674P-201ENST00000363831 107 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.226-201ENST00000364337 114 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.370-201ENST00000365589 108 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.424-201ENST00000384063 103 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.431-201ENST00000384086 102 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 SNORA72.4-201ENST00000384174 132 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 MIR100-201ENST00000385259 80 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 AC022028.1-201ENST00000412054 408 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 RNU7-141P-201ENST00000459304 62 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 NDUFA4P2-201ENST00000489989 244 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 ACA64.5-201ENST00000516207 127 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-830P-201ENST00000516353 107 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 RNU6-197P-201ENST00000516680 100 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 AC008507.4-201ENST00000585464 127 ntBASIC0.68□□□□□ -2.3
KLHDC3Q9BQ90 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
KLHDC3Q9BQ90 AC134026.1-201ENST00000623249 2239 ntBASIC0.67□□□□□ -2.3
KLHDC3Q9BQ90 Y_RNA.222-201ENST00000364264 102 ntBASIC0.67□□□□□ -2.3
KLHDC3Q9BQ90 MIR608-201ENST00000384820 100 ntBASIC0.67□□□□□ -2.3
KLHDC3Q9BQ90 MIR1287-201ENST00000408492 90 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 256 ms