Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU6-969P-201ENST00000383900 105 ntBASIC1.41□□□□□ -2.18
MSH2P43246 MIR653-201ENST00000385279 96 ntBASIC1.41□□□□□ -2.18
MSH2P43246 RNU6-131P-201ENST00000391144 107 ntBASIC1.41□□□□□ -2.18
MSH2P43246 MTND2P23-201ENST00000422990 651 ntBASIC1.41□□□□□ -2.18
MSH2P43246 Y_RNA.641-201ENST00000459414 105 ntBASIC1.41□□□□□ -2.18
MSH2P43246 RN7SKP88-201ENST00000516847 250 ntBASIC1.41□□□□□ -2.18
MSH2P43246 AL161670.1-201ENST00000554348 137 ntBASIC1.41□□□□□ -2.18
MSH2P43246 7SK.8-201ENST00000612110 250 ntBASIC1.41□□□□□ -2.18
MSH2P43246 7SK.11-201ENST00000615477 250 ntBASIC1.41□□□□□ -2.18
MSH2P43246 AC013791.1-201ENST00000616619 62 ntBASIC1.41□□□□□ -2.18
MSH2P43246 7SK.13-201ENST00000622040 250 ntBASIC1.41□□□□□ -2.18
MSH2P43246 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
MSH2P43246 RNU6-1209P-201ENST00000363655 107 ntBASIC1.4□□□□□ -2.19
MSH2P43246 Y_RNA.237-201ENST00000364439 102 ntBASIC1.4□□□□□ -2.19
MSH2P43246 Y_RNA.461-201ENST00000384263 103 ntBASIC1.4□□□□□ -2.19
MSH2P43246 MT-TW-201ENST00000387382 68 ntBASIC1.4□□□□□ -2.19
MSH2P43246 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
MSH2P43246 MIR1302-6-201ENST00000408466 90 ntBASIC1.4□□□□□ -2.19
MSH2P43246 RNU6-917P-201ENST00000516294 104 ntBASIC1.4□□□□□ -2.19
MSH2P43246 Y_RNA.714-201ENST00000517065 90 ntBASIC1.4□□□□□ -2.19
MSH2P43246 MIR3664-201ENST00000579074 99 ntBASIC1.4□□□□□ -2.19
MSH2P43246 MIR2681-201ENST00000581814 105 ntBASIC1.4□□□□□ -2.19
MSH2P43246 AL513534.2-201ENST00000603836 250 ntBASIC1.4□□□□□ -2.19
MSH2P43246 AL645939.4-201ENST00000604495 135 ntBASIC1.4□□□□□ -2.19
MSH2P43246 JPX_2.1-201ENST00000614161 69 ntBASIC1.4□□□□□ -2.19
MSH2P43246 AC099654.10-201ENST00000640395 161 ntBASIC1.4□□□□□ -2.19
MSH2P43246 AL391987.6-201ENST00000305671 199 ntBASIC1.39□□□□□ -2.19
MSH2P43246 RNA5SP327-201ENST00000362494 101 ntBASIC1.39□□□□□ -2.19
MSH2P43246 Y_RNA.796-201ENST00000364268 102 ntBASIC1.39□□□□□ -2.19
MSH2P43246 SNORA25.8-201ENST00000364831 128 ntBASIC1.39□□□□□ -2.19
MSH2P43246 Y_RNA.799-201ENST00000364992 102 ntBASIC1.39□□□□□ -2.19
MSH2P43246 SNORA2.2-201ENST00000365473 135 ntBASIC1.39□□□□□ -2.19
MSH2P43246 RNU6-144P-201ENST00000383951 107 ntBASIC1.39□□□□□ -2.19
MSH2P43246 Y_RNA.483-201ENST00000384380 101 ntBASIC1.39□□□□□ -2.19
MSH2P43246 MIR758-201ENST00000390227 88 ntBASIC1.39□□□□□ -2.19
MSH2P43246 BTF3P11-201ENST00000426582 477 ntBASIC1.39□□□□□ -2.19
MSH2P43246 RNA5SP458-201ENST00000516188 119 ntBASIC1.39□□□□□ -2.19
MSH2P43246 SNORD45.4-201ENST00000516629 73 ntBASIC1.39□□□□□ -2.19
MSH2P43246 AC090049.2-201ENST00000550377 109 ntBASIC1.39□□□□□ -2.19
MSH2P43246 MIR4303-201ENST00000581299 66 ntBASIC1.39□□□□□ -2.19
MSH2P43246 snoU18.1-201ENST00000629629 71 ntBASIC1.39□□□□□ -2.19
MSH2P43246 U6.104-201ENST00000637979 90 ntBASIC1.39□□□□□ -2.19
MSH2P43246 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
MSH2P43246 MIR335-201ENST00000362173 94 ntBASIC1.38□□□□□ -2.19
MSH2P43246 RNU6-1084P-201ENST00000362498 107 ntBASIC1.38□□□□□ -2.19
MSH2P43246 Y_RNA.47-201ENST00000362697 108 ntBASIC1.38□□□□□ -2.19
MSH2P43246 RNU6-1309P-201ENST00000363305 108 ntBASIC1.38□□□□□ -2.19
MSH2P43246 Y_RNA.149-201ENST00000363558 117 ntBASIC1.38□□□□□ -2.19
MSH2P43246 RNU6-1205P-201ENST00000363625 106 ntBASIC1.38□□□□□ -2.19
MSH2P43246 SNORD50B-201ENST00000364995 70 ntBASIC1.38□□□□□ -2.19
MSH2P43246 snoU2-30.1-201ENST00000365012 70 ntBASIC1.38□□□□□ -2.19
MSH2P43246 RNU6-472P-201ENST00000384299 107 ntBASIC1.38□□□□□ -2.19
MSH2P43246 SNORA17.3-201ENST00000391159 129 ntBASIC1.38□□□□□ -2.19
MSH2P43246 MIR1278-201ENST00000408753 81 ntBASIC1.38□□□□□ -2.19
MSH2P43246 AC108667.1-201ENST00000428618 249 ntBASIC1.38□□□□□ -2.19
MSH2P43246 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.38□□□□□ -2.19
MSH2P43246 RNU6-1045P-201ENST00000516321 107 ntBASIC1.38□□□□□ -2.19
MSH2P43246 RNU6-922P-201ENST00000516753 99 ntBASIC1.38□□□□□ -2.19
MSH2P43246 MIR5692C2-201ENST00000577959 77 ntBASIC1.38□□□□□ -2.19
MSH2P43246 AL353621.2-201ENST00000605340 133 ntBASIC1.38□□□□□ -2.19
MSH2P43246 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.38□□□□□ -2.19
MSH2P43246 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.38□□□□□ -2.19
MSH2P43246 AC068700.1-201ENST00000565862 3754 ntBASIC1.37□□□□□ -2.19
MSH2P43246 Y_RNA.275-201ENST00000364726 110 ntBASIC1.37□□□□□ -2.19
MSH2P43246 Y_RNA.518-201ENST00000384552 113 ntBASIC1.37□□□□□ -2.19
MSH2P43246 MIR526A1-201ENST00000384897 85 ntBASIC1.37□□□□□ -2.19
MSH2P43246 MIR150-201ENST00000385048 84 ntBASIC1.37□□□□□ -2.19
MSH2P43246 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.37□□□□□ -2.19
MSH2P43246 AC015922.2-201ENST00000435593 184 ntBASIC1.37□□□□□ -2.19
MSH2P43246 NDUFA4P2-201ENST00000489989 244 ntBASIC1.37□□□□□ -2.19
MSH2P43246 RNU1-92P-201ENST00000517017 135 ntBASIC1.37□□□□□ -2.19
MSH2P43246 RPL23AP91-201ENST00000569211 455 ntBASIC1.37□□□□□ -2.19
MSH2P43246 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.37□□□□□ -2.19
MSH2P43246 AL512598.1-201ENST00000610158 273 ntBASIC1.37□□□□□ -2.19
MSH2P43246 AL008718.3-201ENST00000610217 321 ntBASIC1.37□□□□□ -2.19
MSH2P43246 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
MSH2P43246 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.36□□□□□ -2.19
MSH2P43246 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
MSH2P43246 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.36□□□□□ -2.19
MSH2P43246 Y_RNA.133-201ENST00000363428 110 ntBASIC1.36□□□□□ -2.19
MSH2P43246 RNU6-1289P-201ENST00000384431 106 ntBASIC1.36□□□□□ -2.19
MSH2P43246 MIR452-201ENST00000385020 85 ntBASIC1.36□□□□□ -2.19
MSH2P43246 SNORD41-201ENST00000386967 70 ntBASIC1.36□□□□□ -2.19
MSH2P43246 MIR1298-201ENST00000408783 112 ntBASIC1.36□□□□□ -2.19
MSH2P43246 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.36□□□□□ -2.19
MSH2P43246 HMGN2P32-201ENST00000444648 269 ntBASIC1.36□□□□□ -2.19
MSH2P43246 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.36□□□□□ -2.19
MSH2P43246 MTCO2P24-201ENST00000515611 426 ntBASIC1.36□□□□□ -2.19
MSH2P43246 RNU6-322P-201ENST00000516010 103 ntBASIC1.36□□□□□ -2.19
MSH2P43246 AC068338.1-201ENST00000565567 176 ntBASIC1.36□□□□□ -2.19
MSH2P43246 AC087685.1-201ENST00000587507 141 ntBASIC1.36□□□□□ -2.19
MSH2P43246 AP000942.3-201ENST00000603702 160 ntBASIC1.36□□□□□ -2.19
MSH2P43246 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.36□□□□□ -2.19
MSH2P43246 RNA5SP432-201ENST00000362480 116 ntBASIC1.35□□□□□ -2.19
MSH2P43246 Y_RNA.44-201ENST00000362676 108 ntBASIC1.35□□□□□ -2.19
MSH2P43246 Y_RNA.396-201ENST00000383949 103 ntBASIC1.35□□□□□ -2.19
MSH2P43246 AL451046.2-201ENST00000403074 277 ntBASIC1.35□□□□□ -2.19
MSH2P43246 RNU4-62P-201ENST00000410125 130 ntBASIC1.35□□□□□ -2.19
MSH2P43246 SNORD11-201ENST00000459124 84 ntBASIC1.35□□□□□ -2.19
MSH2P43246 AL133373.1-201ENST00000497098 94 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms