Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
SIX3O95343 RPL23AP54-201ENST00000495129 419 ntBASIC1.06□□□□□ -2.24
SIX3O95343 MTND3P22-201ENST00000510932 243 ntBASIC1.06□□□□□ -2.24
SIX3O95343 RNU6-1170P-201ENST00000515974 106 ntBASIC1.06□□□□□ -2.24
SIX3O95343 RNU6-966P-201ENST00000516479 104 ntBASIC1.06□□□□□ -2.24
SIX3O95343 RNU6-113P-201ENST00000516653 101 ntBASIC1.06□□□□□ -2.24
SIX3O95343 MIR4795-201ENST00000584182 89 ntBASIC1.06□□□□□ -2.24
SIX3O95343 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.06□□□□□ -2.24
SIX3O95343 MIR8087-201ENST00000612745 78 ntBASIC1.06□□□□□ -2.24
SIX3O95343 AC010205.1-201ENST00000616668 449 ntBASIC1.06□□□□□ -2.24
SIX3O95343 AL008636.1-201ENST00000625038 1018 ntBASIC1.06□□□□□ -2.24
SIX3O95343 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.06□□□□□ -2.24
SIX3O95343 SNORD14E-201ENST00000364009 85 ntBASIC1.05□□□□□ -2.24
SIX3O95343 RNU4-50P-201ENST00000364361 141 ntBASIC1.05□□□□□ -2.24
SIX3O95343 SNORD14.1-201ENST00000365609 90 ntBASIC1.05□□□□□ -2.24
SIX3O95343 Y_RNA.496-201ENST00000384444 101 ntBASIC1.05□□□□□ -2.24
SIX3O95343 MIR520C-201ENST00000385005 87 ntBASIC1.05□□□□□ -2.24
SIX3O95343 MIR522-201ENST00000385071 87 ntBASIC1.05□□□□□ -2.24
SIX3O95343 Y_RNA.579-201ENST00000390939 94 ntBASIC1.05□□□□□ -2.24
SIX3O95343 SNORD12-201ENST00000391002 90 ntBASIC1.05□□□□□ -2.24
SIX3O95343 RNU4-77P-201ENST00000516692 156 ntBASIC1.05□□□□□ -2.24
SIX3O95343 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.05□□□□□ -2.24
SIX3O95343 AC012676.2-201ENST00000619258 186 ntBASIC1.05□□□□□ -2.24
SIX3O95343 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
SIX3O95343 AC008163.1-202ENST00000636004 2889 ntBASIC1.05□□□□□ -2.24
SIX3O95343 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.04□□□□□ -2.24
SIX3O95343 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
SIX3O95343 Y_RNA.80-201ENST00000362996 102 ntBASIC1.04□□□□□ -2.24
SIX3O95343 RNU4-73P-201ENST00000363164 141 ntBASIC1.04□□□□□ -2.24
SIX3O95343 Y_RNA.143-201ENST00000363520 106 ntBASIC1.04□□□□□ -2.24
SIX3O95343 RNU1-124P-201ENST00000363861 145 ntBASIC1.04□□□□□ -2.24
SIX3O95343 Y_RNA.456-201ENST00000384232 111 ntBASIC1.04□□□□□ -2.24
SIX3O95343 RNU6-937P-201ENST00000384325 106 ntBASIC1.04□□□□□ -2.24
SIX3O95343 Y_RNA.485-201ENST00000384395 102 ntBASIC1.04□□□□□ -2.24
SIX3O95343 Y_RNA.518-201ENST00000384552 113 ntBASIC1.04□□□□□ -2.24
SIX3O95343 RNU4-30P-201ENST00000410245 143 ntBASIC1.04□□□□□ -2.24
SIX3O95343 AC022028.1-201ENST00000412054 408 ntBASIC1.04□□□□□ -2.24
SIX3O95343 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.04□□□□□ -2.24
SIX3O95343 UBL5P1-201ENST00000507979 193 ntBASIC1.04□□□□□ -2.24
SIX3O95343 SNORA25.10-201ENST00000515926 124 ntBASIC1.04□□□□□ -2.24
SIX3O95343 SNORD79.1-201ENST00000516069 84 ntBASIC1.04□□□□□ -2.24
SIX3O95343 SNORD116-28-201ENST00000516123 91 ntBASIC1.04□□□□□ -2.24
SIX3O95343 SNORA18.7-201ENST00000516910 131 ntBASIC1.04□□□□□ -2.24
SIX3O95343 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.04□□□□□ -2.24
SIX3O95343 MIR4762-201ENST00000585261 75 ntBASIC1.04□□□□□ -2.24
SIX3O95343 SNORD114-21-201ENST00000606412 72 ntBASIC1.04□□□□□ -2.24
SIX3O95343 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.04□□□□□ -2.24
SIX3O95343 AL096861.1-201ENST00000610899 123 ntBASIC1.04□□□□□ -2.24
SIX3O95343 Y_RNA.330-201ENST00000365230 109 ntBASIC1.03□□□□□ -2.24
SIX3O95343 AL590004.1-201ENST00000405321 300 ntBASIC1.03□□□□□ -2.24
SIX3O95343 POLR2KP2-201ENST00000438155 177 ntBASIC1.03□□□□□ -2.24
SIX3O95343 AC245047.8-201ENST00000456455 284 ntBASIC1.03□□□□□ -2.24
SIX3O95343 MIR3145-201ENST00000580727 82 ntBASIC1.03□□□□□ -2.24
SIX3O95343 AC010487.4-201ENST00000637027 61 ntBASIC1.03□□□□□ -2.24
SIX3O95343 Y_RNA.315-201ENST00000365117 102 ntBASIC1.02□□□□□ -2.25
SIX3O95343 RNU6-1323P-201ENST00000384025 107 ntBASIC1.02□□□□□ -2.25
SIX3O95343 MIR942-201ENST00000401111 86 ntBASIC1.02□□□□□ -2.25
SIX3O95343 AC002429.1-201ENST00000437672 148 ntBASIC1.02□□□□□ -2.25
SIX3O95343 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.02□□□□□ -2.25
SIX3O95343 RPS29P28-201ENST00000446439 141 ntBASIC1.02□□□□□ -2.25
SIX3O95343 AC117454.1-201ENST00000491120 168 ntBASIC1.02□□□□□ -2.25
SIX3O95343 AC040926.1-201ENST00000530195 238 ntBASIC1.02□□□□□ -2.25
SIX3O95343 MIR4661-201ENST00000582720 75 ntBASIC1.02□□□□□ -2.25
SIX3O95343 Y_RNA.5-201ENST00000362334 102 ntBASIC1.01□□□□□ -2.25
SIX3O95343 Y_RNA.60-201ENST00000362831 98 ntBASIC1.01□□□□□ -2.25
SIX3O95343 Y_RNA.197-201ENST00000364004 102 ntBASIC1.01□□□□□ -2.25
SIX3O95343 SNORD114-24-201ENST00000365029 72 ntBASIC1.01□□□□□ -2.25
SIX3O95343 Y_RNA.551-201ENST00000384661 102 ntBASIC1.01□□□□□ -2.25
SIX3O95343 RNU7-90P-201ENST00000459216 62 ntBASIC1.01□□□□□ -2.25
SIX3O95343 AC024405.2-202ENST00000532731 184 ntBASIC1.01□□□□□ -2.25
SIX3O95343 MIR4423-201ENST00000580922 80 ntBASIC1.01□□□□□ -2.25
SIX3O95343 AL080274.1-201ENST00000605565 220 ntBASIC1.01□□□□□ -2.25
SIX3O95343 SNORD58B-201ENST00000607313 66 ntBASIC1.01□□□□□ -2.25
SIX3O95343 MIR103A2-201ENST00000362154 78 ntBASIC1□□□□□ -2.25
SIX3O95343 MIR330-201ENST00000362196 94 ntBASIC1□□□□□ -2.25
SIX3O95343 Y_RNA.203-201ENST00000364106 102 ntBASIC1□□□□□ -2.25
SIX3O95343 SNORD50B-201ENST00000364995 70 ntBASIC1□□□□□ -2.25
SIX3O95343 SNORD38C-201ENST00000384381 69 ntBASIC1□□□□□ -2.25
SIX3O95343 RNU6-1248P-201ENST00000391096 64 ntBASIC1□□□□□ -2.25
SIX3O95343 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1□□□□□ -2.25
SIX3O95343 SNORD124-201ENST00000459577 104 ntBASIC1□□□□□ -2.25
SIX3O95343 SEPT14P8-201ENST00000508026 178 ntBASIC1□□□□□ -2.25
SIX3O95343 SNORA74.3-201ENST00000517108 154 ntBASIC1□□□□□ -2.25
SIX3O95343 AC090142.3-201ENST00000519012 385 ntBASIC1□□□□□ -2.25
SIX3O95343 AC211469.2-201ENST00000605461 205 ntBASIC1□□□□□ -2.25
SIX3O95343 AC091925.1-201ENST00000623204 462 ntBASIC1□□□□□ -2.25
SIX3O95343 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1□□□□□ -2.25
SIX3O95343 SNORD114-23-201ENST00000363536 72 ntBASIC0.99□□□□□ -2.25
SIX3O95343 Y_RNA.363-201ENST00000365529 113 ntBASIC0.99□□□□□ -2.25
SIX3O95343 Y_RNA.368-201ENST00000365547 113 ntBASIC0.99□□□□□ -2.25
SIX3O95343 Y_RNA.431-201ENST00000384086 102 ntBASIC0.99□□□□□ -2.25
SIX3O95343 RNY3P14-201ENST00000384309 102 ntBASIC0.99□□□□□ -2.25
SIX3O95343 MIR19B1-201ENST00000384829 87 ntBASIC0.99□□□□□ -2.25
SIX3O95343 MIR200A-201ENST00000384875 90 ntBASIC0.99□□□□□ -2.25
SIX3O95343 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.99□□□□□ -2.25
SIX3O95343 PDCD5P2-201ENST00000507570 312 ntBASIC0.99□□□□□ -2.25
SIX3O95343 MIR4295-201ENST00000585286 85 ntBASIC0.99□□□□□ -2.25
SIX3O95343 HSPE1P19-201ENST00000603327 295 ntBASIC0.99□□□□□ -2.25
SIX3O95343 MIR548AY-201ENST00000617669 107 ntBASIC0.99□□□□□ -2.25
SIX3O95343 SNORA25.3-201ENST00000363205 127 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms