Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MTATP6P23-201ENST00000440153 476 ntBASIC0.02□□□□□ -2.41
SHOX2O60902 RNU6-1281P-201ENST00000516223 105 ntBASIC0.02□□□□□ -2.41
SHOX2O60902 AC012433.1-201ENST00000588916 398 ntBASIC0.02□□□□□ -2.41
SHOX2O60902 AC078938.1-201ENST00000620993 318 ntBASIC0.02□□□□□ -2.41
SHOX2O60902 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.01□□□□□ -2.41
SHOX2O60902 SNORA40.9-201ENST00000515895 93 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 RNU1-54P-201ENST00000517181 120 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 MIR5701-3-201ENST00000578890 82 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 MIR5701-1-201ENST00000585138 82 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 AP000753.3-201ENST00000604083 169 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 LARP7P1-201ENST00000605576 316 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 MIR5701-2-201ENST00000615634 82 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 AL391262.2-201ENST00000622466 494 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 AC124864.2-201ENST00000624736 186 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 MIR4320-201ENST00000636981 65 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 MTND5P26-201ENST00000426018 1752 ntBASIC0.01□□□□□ -2.41
SHOX2O60902 SNORD115-30-201ENST00000364117 82 ntBASIC0□□□□□ -2.41
SHOX2O60902 Y_RNA.256-201ENST00000364594 104 ntBASIC0□□□□□ -2.41
SHOX2O60902 SNORD50B-201ENST00000364995 70 ntBASIC0□□□□□ -2.41
SHOX2O60902 RNU6-934P-201ENST00000365154 107 ntBASIC0□□□□□ -2.41
SHOX2O60902 RNU2-54P-201ENST00000410299 190 ntBASIC0□□□□□ -2.41
SHOX2O60902 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0□□□□□ -2.41
SHOX2O60902 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0□□□□□ -2.41
SHOX2O60902 SCARNA16.5-201ENST00000517114 183 ntBASIC0□□□□□ -2.41
SHOX2O60902 EIF1P4-201ENST00000572664 335 ntBASIC0□□□□□ -2.41
SHOX2O60902 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0□□□□□ -2.41
SHOX2O60902 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0□□□□□ -2.41
SHOX2O60902 MIR3681-201ENST00000580089 72 ntBASIC0□□□□□ -2.41
SHOX2O60902 MIR548AR-201ENST00000582191 57 ntBASIC0□□□□□ -2.41
SHOX2O60902 MIR4290-201ENST00000583807 95 ntBASIC0□□□□□ -2.41
SHOX2O60902 Y_RNA.77-201ENST00000362962 107 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 SNORA42.1-201ENST00000363515 137 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 SNORD14E-201ENST00000364009 85 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 Y_RNA.359-201ENST00000365498 102 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 SNORD83.1-201ENST00000411362 77 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 RNU6-329P-201ENST00000459618 107 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 AC010424.1-201ENST00000506336 297 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-0.01□□□□□ -2.41
SHOX2O60902 MIR548AO-201ENST00000579992 96 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 AC119751.7-201ENST00000600494 245 ntBASIC-0.01□□□□□ -2.41
SHOX2O60902 MIR365A-201ENST00000362260 87 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 RNY1P16-201ENST00000363063 111 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 RNY4P6-201ENST00000363667 96 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 RNA5SP517-201ENST00000364724 117 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 Y_RNA.368-201ENST00000365547 113 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 Y_RNA.537-201ENST00000384626 109 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 MIR635-201ENST00000384830 98 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 MIR587-201ENST00000384845 96 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 AC073261.1-201ENST00000429409 121 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 SNRPGP10-201ENST00000432323 225 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 RNU7-87P-201ENST00000459343 62 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 SNORA25.10-201ENST00000515926 124 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 RNU2-12P-201ENST00000517216 168 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 AC069113.3-201ENST00000521019 150 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 AC007751.1-201ENST00000529260 376 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 AC006362.1-201ENST00000567392 174 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 MIR4804-201ENST00000581683 73 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 MIR4264-201ENST00000583520 66 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 MIR4760-201ENST00000585040 80 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 AC006380.1-201ENST00000603598 186 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 AC090582.1-201ENST00000636321 199 ntBASIC-0.02□□□□□ -2.41
SHOX2O60902 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC-0.02□□□□□ -2.41
SHOX2O60902 Y_RNA.204-201ENST00000364112 102 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 RNU6-815P-201ENST00000384080 113 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 SNORA72-201ENST00000384339 132 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 Y_RNA.557-201ENST00000384680 107 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 SNORD28B-201ENST00000390993 75 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 RNU6-679P-201ENST00000391003 106 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 RNU6-908P-201ENST00000410160 94 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-0.03□□□□□ -2.41
SHOX2O60902 RNU6-830P-201ENST00000516353 107 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 AC105029.1-201ENST00000520250 669 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 MIR4771-2-201ENST00000577758 74 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 MIR4771-1-201ENST00000582617 74 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 RN7SL660P-201ENST00000614852 299 ntBASIC-0.03□□□□□ -2.41
SHOX2O60902 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 RNY3P3-201ENST00000363816 102 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 RNU6-259P-201ENST00000383999 107 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 RNU6-1119P-201ENST00000384349 108 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 AL139396.1-201ENST00000421137 167 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 USP9YP30-201ENST00000430729 455 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC-0.04□□□□□ -2.42
SHOX2O60902 SNORD5.1-201ENST00000458800 75 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 AC093534.1-201ENST00000504977 132 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.04□□□□□ -2.42
SHOX2O60902 AC005972.2-201ENST00000604690 348 ntBASIC-0.04□□□□□ -2.42
SHOX2O60902 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.04□□□□□ -2.42
SHOX2O60902 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.05□□□□□ -2.42
SHOX2O60902 DEFB108C-201ENST00000400154 252 ntBASIC-0.05□□□□□ -2.42
SHOX2O60902 SNORD100-201ENST00000408573 76 ntBASIC-0.05□□□□□ -2.42
SHOX2O60902 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-0.05□□□□□ -2.42
SHOX2O60902 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.05□□□□□ -2.42
SHOX2O60902 AC019235.1-201ENST00000503847 207 ntBASIC-0.05□□□□□ -2.42
SHOX2O60902 Y_RNA.717-201ENST00000517106 92 ntBASIC-0.05□□□□□ -2.42
SHOX2O60902 AP001328.1-201ENST00000528550 176 ntBASIC-0.05□□□□□ -2.42
SHOX2O60902 MIR4676-201ENST00000583078 72 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms