Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
HOXC11O43248 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.46□□□□□ -2.18
HOXC11O43248 Y_RNA.64-201ENST00000362845 102 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 SNORD14E-201ENST00000364009 85 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 RNU6-326P-201ENST00000365480 107 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 MIR150-201ENST00000385048 84 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 MIR1298-201ENST00000408783 112 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 RNU2-14P-201ENST00000411053 191 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 AC113618.1-201ENST00000416747 285 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 RPL21P38-201ENST00000418090 167 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.46□□□□□ -2.18
HOXC11O43248 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 RNU6-1007P-201ENST00000516586 107 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 AP003072.1-201ENST00000531740 145 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 AL160236.1-201ENST00000556317 195 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 AC087685.1-201ENST00000587507 141 ntBASIC1.46□□□□□ -2.18
HOXC11O43248 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
HOXC11O43248 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
HOXC11O43248 U8.1-201ENST00000362843 134 ntBASIC1.45□□□□□ -2.18
HOXC11O43248 snoU2_19.2-201ENST00000363024 80 ntBASIC1.45□□□□□ -2.18
HOXC11O43248 RNU6-806P-201ENST00000365147 105 ntBASIC1.45□□□□□ -2.18
HOXC11O43248 Y_RNA.541-201ENST00000384640 113 ntBASIC1.45□□□□□ -2.18
HOXC11O43248 MIR215-201ENST00000384858 110 ntBASIC1.45□□□□□ -2.18
HOXC11O43248 SNORD41-201ENST00000386967 70 ntBASIC1.45□□□□□ -2.18
HOXC11O43248 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.45□□□□□ -2.18
HOXC11O43248 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
HOXC11O43248 RNU6-674P-201ENST00000363831 107 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 Y_RNA.226-201ENST00000364337 114 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 SNORA25.8-201ENST00000364831 128 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 RNU6-713P-201ENST00000384761 107 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 MIR526A1-201ENST00000384897 85 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 MIR15B-201ENST00000385045 98 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 MIR136-201ENST00000385207 82 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 MIR320A-201ENST00000385302 82 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 SNORA26.5-201ENST00000391215 123 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 RNU6-955P-201ENST00000410497 104 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 AC023790.1-201ENST00000482174 347 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.44□□□□□ -2.18
HOXC11O43248 MIR7974-201ENST00000615835 79 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 MIR8070-201ENST00000616510 88 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 AC134026.1-201ENST00000623249 2239 ntBASIC1.44□□□□□ -2.18
HOXC11O43248 RNU6-1205P-201ENST00000363625 106 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 RNU6-1209P-201ENST00000363655 107 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 SNORD50B-201ENST00000364995 70 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 Y_RNA.336-201ENST00000365307 109 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 RNU6-144P-201ENST00000383951 107 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 RNU6-763P-201ENST00000390865 106 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 AC023449.1-201ENST00000454464 154 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 RNU6-165P-201ENST00000517170 99 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 AC019288.1-201ENST00000557918 224 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 AC005357.1-201ENST00000588399 301 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 AL157834.3-201ENST00000615543 103 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 AL353770.2-201ENST00000620024 78 ntBASIC1.43□□□□□ -2.18
HOXC11O43248 Y_RNA.26-201ENST00000362539 101 ntBASIC1.42□□□□□ -2.18
HOXC11O43248 Y_RNA.242-201ENST00000364473 110 ntBASIC1.42□□□□□ -2.18
HOXC11O43248 RNU6-939P-201ENST00000384634 107 ntBASIC1.42□□□□□ -2.18
HOXC11O43248 RNU6-1011P-201ENST00000384668 107 ntBASIC1.42□□□□□ -2.18
HOXC11O43248 MIR516B2-201ENST00000385190 85 ntBASIC1.42□□□□□ -2.18
HOXC11O43248 SNRPGP13-201ENST00000442212 177 ntBASIC1.42□□□□□ -2.18
HOXC11O43248 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.42□□□□□ -2.18
HOXC11O43248 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.42□□□□□ -2.18
HOXC11O43248 RPL23AP91-201ENST00000569211 455 ntBASIC1.42□□□□□ -2.18
HOXC11O43248 Y_RNA.796-201ENST00000364268 102 ntBASIC1.41□□□□□ -2.18
HOXC11O43248 Y_RNA.799-201ENST00000364992 102 ntBASIC1.41□□□□□ -2.18
HOXC11O43248 RNU6-969P-201ENST00000383900 105 ntBASIC1.41□□□□□ -2.18
HOXC11O43248 SNORA31.4-201ENST00000516049 129 ntBASIC1.41□□□□□ -2.18
HOXC11O43248 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
HOXC11O43248 RNA5SP327-201ENST00000362494 101 ntBASIC1.4□□□□□ -2.19
HOXC11O43248 Y_RNA.84-201ENST00000363011 104 ntBASIC1.4□□□□□ -2.19
HOXC11O43248 RNU6-442P-201ENST00000383968 104 ntBASIC1.4□□□□□ -2.19
HOXC11O43248 SNORD38C-201ENST00000384381 69 ntBASIC1.4□□□□□ -2.19
HOXC11O43248 AC015922.2-201ENST00000435593 184 ntBASIC1.4□□□□□ -2.19
HOXC11O43248 AC091959.1-201ENST00000495857 238 ntBASIC1.4□□□□□ -2.19
HOXC11O43248 SNORD111.1-201ENST00000516421 86 ntBASIC1.4□□□□□ -2.19
HOXC11O43248 AC013791.1-201ENST00000616619 62 ntBASIC1.4□□□□□ -2.19
HOXC11O43248 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.4□□□□□ -2.19
HOXC11O43248 Y_RNA.14-201ENST00000362415 103 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 RNU6-1272P-201ENST00000362776 107 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 Y_RNA.326-201ENST00000365176 113 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 MIR222-201ENST00000384992 110 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 RNU6-1109P-201ENST00000391187 107 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 BTF3P11-201ENST00000426582 477 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 SNORA31.2-201ENST00000516019 134 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 SNORA27.4-201ENST00000516650 95 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 RNU6-570P-201ENST00000517051 105 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 Y_RNA.720-201ENST00000517166 92 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 AC090142.3-201ENST00000519012 385 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 Y_RNA.812-201ENST00000610788 101 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 Y_RNA.784-201ENST00000613803 101 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 Y_RNA.787-201ENST00000616522 101 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 Y_RNA.780-201ENST00000617336 101 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 Y_RNA.801-201ENST00000619005 101 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 U6.104-201ENST00000637979 90 ntBASIC1.39□□□□□ -2.19
HOXC11O43248 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
HOXC11O43248 Y_RNA.16-201ENST00000362421 102 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 RNU6-1160P-201ENST00000384546 104 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 MIR1278-201ENST00000408753 81 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 RNU1-123P-201ENST00000458950 160 ntBASIC1.38□□□□□ -2.19
HOXC11O43248 AC004223.1-201ENST00000479840 271 ntBASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms