Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SNORA40.8-201ENST00000411034 126 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 SNORD71-201ENST00000411292 86 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 RNU6-436P-201ENST00000516171 114 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 SNORA25.12-201ENST00000516202 82 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 RNU6-155P-201ENST00000516347 100 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 RNU6-966P-201ENST00000516479 104 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 MIR4676-201ENST00000583078 72 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 MIR4264-201ENST00000583520 66 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 MIR151B-201ENST00000584249 96 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 AP000753.3-201ENST00000604083 169 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 MIR4791-201ENST00000607666 84 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 MIR6504-201ENST00000613520 61 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 AC015540.1-201ENST00000615828 501 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 AC007742.2-201ENST00000618226 398 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 AC092794.2-201ENST00000620933 563 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.9-201ENST00000362354 101 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.404-201ENST00000383978 102 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 RNU6-601P-201ENST00000384540 107 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 MTCO2P33-201ENST00000402100 465 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 MIR1276-201ENST00000408707 83 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 MTND4P28-201ENST00000426217 387 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 FCF1P4-201ENST00000448326 183 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 MTND3P10-201ENST00000450967 341 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 MIR2053-201ENST00000459295 91 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 RPS29P25-201ENST00000481709 171 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 RPL17P19-201ENST00000489069 552 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 RNA5SP94-201ENST00000516917 108 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 RNU7-181P-201ENST00000517234 74 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 AC026407.1-201ENST00000518369 204 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 AC245505.1-201ENST00000556398 224 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 MIR4452-201ENST00000583004 71 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 AC005176.2-201ENST00000596933 147 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 LARP7P1-201ENST00000605576 316 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 AC020891.4-201ENST00000605745 93 ntBASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.05□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.146-201ENST00000363549 102 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.203-201ENST00000364106 102 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 RNU6-268P-201ENST00000364174 107 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 RNU6-1323P-201ENST00000384025 107 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.446-201ENST00000384178 104 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.450-201ENST00000384198 113 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 MIR802-201ENST00000390235 94 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 RNU6-855P-201ENST00000410395 104 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 BTF3P11-201ENST00000426582 477 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 RPL30P15-201ENST00000457129 321 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 MIR4711-201ENST00000578274 70 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 AC005899.2-201ENST00000584353 90 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 SNORA25.18-201ENST00000607153 114 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 AC103591.3-201ENST00000608684 209 ntBASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.04□□□□□ -2.4
VCX3AQ9NNX9 RNU6-99P-201ENST00000364721 107 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.295-201ENST00000364918 102 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.517-201ENST00000384551 106 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.592-201ENST00000410274 109 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 RNU7-56P-201ENST00000458744 62 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 AC008507.4-201ENST00000585464 127 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 JPX_2.1-201ENST00000614161 69 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 uc_338.4-201ENST00000616635 176 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 AC087588.2-201ENST00000617667 426 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 AC078938.1-201ENST00000620993 318 ntBASIC0.03□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.72-201ENST00000362894 103 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU4-75P-201ENST00000364621 146 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 SNORA1.2-201ENST00000365189 134 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU6-815P-201ENST00000384080 113 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU6-20P-201ENST00000384106 107 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 RNY3P4-201ENST00000384428 101 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.554-201ENST00000384672 102 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 MIR936-201ENST00000401264 98 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 SNORD100-201ENST00000408573 76 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 AC073261.1-201ENST00000429409 121 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU7-62P-201ENST00000458856 62 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU2-13P-201ENST00000515909 113 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 SCARNA8-201ENST00000515924 131 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 SNORA18.4-201ENST00000516440 124 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU6-307P-201ENST00000516743 106 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 RNU7-116P-201ENST00000516940 62 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 uc_338.6-201ENST00000613544 171 ntBASIC0.02□□□□□ -2.41
VCX3AQ9NNX9 SNORD118-201ENST00000363593 134 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 RNU6-1209P-201ENST00000363655 107 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.194-201ENST00000363985 102 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.796-201ENST00000364268 102 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.799-201ENST00000364992 102 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.310-201ENST00000365063 113 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.329-201ENST00000365209 107 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.339-201ENST00000365325 102 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 SNORA8.2-201ENST00000384372 139 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 Y_RNA.482-201ENST00000384377 111 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 SNORA69.1-201ENST00000390904 137 ntBASIC0.01□□□□□ -2.41
VCX3AQ9NNX9 SNORD78.2-201ENST00000391076 69 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms