Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 FAM71BP1-201ENST00000604431 523 ntBASIC0.8□□□□□ -2.28
KLHDC3Q9BQ90 PRELID3BP2-201ENST00000605362 201 ntBASIC0.8□□□□□ -2.28
KLHDC3Q9BQ90 AC104985.2-201ENST00000620598 500 ntBASIC0.8□□□□□ -2.28
KLHDC3Q9BQ90 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
KLHDC3Q9BQ90 RNU6-1084P-201ENST00000362498 107 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 Y_RNA.310-201ENST00000365063 113 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 Y_RNA.341-201ENST00000365341 102 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 Y_RNA.356-201ENST00000365475 113 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 Y_RNA.458-201ENST00000384240 102 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 MLLT10P1-201ENST00000418346 262 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 RPS26P48-201ENST00000491713 339 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 SNORD45.4-201ENST00000516629 73 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 AC093027.1-201ENST00000546698 429 ntBASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.79□□□□□ -2.28
KLHDC3Q9BQ90 Y_RNA.5-201ENST00000362334 102 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 SNORD114-24-201ENST00000365029 72 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 RNU1-36P-201ENST00000365130 165 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 MIR520E-201ENST00000384867 87 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 SNRPGP10-201ENST00000432323 225 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 RNU7-21P-201ENST00000459430 62 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 RNU6-113P-201ENST00000516653 101 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 SNORA74.3-201ENST00000517108 154 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 AC090142.3-201ENST00000519012 385 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 MIR3192-201ENST00000584920 77 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 AC011373.1-201ENST00000607270 237 ntBASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
KLHDC3Q9BQ90 AC008163.1-202ENST00000636004 2889 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 SNORA25.9-201ENST00000365087 128 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 RNU6-969P-201ENST00000383900 105 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.439-201ENST00000384119 94 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 SNORD63-201ENST00000384262 68 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.551-201ENST00000384661 102 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 MIR516B2-201ENST00000385190 85 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 SNORA75.2-201ENST00000391138 150 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 SNORA75.3-201ENST00000391231 150 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 RNU2-64P-201ENST00000411315 191 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 snoU13.25-201ENST00000458945 104 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 RNU7-90P-201ENST00000459216 62 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 RNU6-507P-201ENST00000516045 100 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 RNU7-110P-201ENST00000516891 62 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 MIR4653-201ENST00000585107 83 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 POLR3GP1-201ENST00000594073 261 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 DEFB117-201ENST00000602356 141 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 AC136443.5-201ENST00000603741 370 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 AL020996.3-201ENST00000606617 222 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 SNORD58B-201ENST00000607313 66 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 AC007742.2-201ENST00000618226 398 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 AC112487.2-201ENST00000637950 304 ntBASIC0.77□□□□□ -2.29
KLHDC3Q9BQ90 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 SNORD81.1-201ENST00000363064 77 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 RNU4-50P-201ENST00000364361 141 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 SNORD50B-201ENST00000364995 70 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 SNORD14.1-201ENST00000365609 90 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 RNU6-21P-201ENST00000384710 107 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 MIR520C-201ENST00000385005 87 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 AL590004.1-201ENST00000405321 300 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 U8.20-201ENST00000459445 131 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 SNORD124-201ENST00000459577 104 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 MTND3P22-201ENST00000510932 243 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 RNU6-475P-201ENST00000516073 104 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 RNU7-43P-201ENST00000516554 64 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 AC087685.1-201ENST00000587507 141 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 AP003357.1-201ENST00000604497 148 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 MIR6504-201ENST00000613520 61 ntBASIC0.76□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.58-201ENST00000362807 102 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 RNA5SP264-201ENST00000363115 107 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.154-201ENST00000363624 102 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 RNA5SP48-201ENST00000363969 126 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 RNY3P1-201ENST00000365085 102 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.315-201ENST00000365117 102 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 RNY3-201ENST00000365484 102 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 MT-TD-201ENST00000387419 68 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 MTND1P14-201ENST00000427400 950 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 HMGN1P10-201ENST00000474557 553 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 PDCD5P2-201ENST00000507570 312 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 RNU7-115P-201ENST00000516433 55 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 AC024405.2-202ENST00000532731 184 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 AC127455.1-201ENST00000565496 145 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 AC211469.2-201ENST00000605461 205 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 MIR6857-201ENST00000613267 93 ntBASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
KLHDC3Q9BQ90 MIR103A2-201ENST00000362154 78 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.197-201ENST00000364004 102 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 SNORD14E-201ENST00000364009 85 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 Y_RNA.203-201ENST00000364106 102 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 RNY1P14-201ENST00000384426 108 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 MIR499A-201ENST00000384903 122 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 RPS29P1-201ENST00000465274 159 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 SNORA18.7-201ENST00000516910 131 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 AP003716.2-201ENST00000528260 108 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 MIR4764-201ENST00000580680 88 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 JPX_2.1-201ENST00000614161 69 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 MIR548AY-201ENST00000617669 107 ntBASIC0.74□□□□□ -2.29
KLHDC3Q9BQ90 AL442644.1-201ENST00000454390 3105 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 219.9 ms