Protein–RNA interactions for Protein: Q99250

SCN2A, Sodium channel protein type 2 subunit alpha, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2AQ99250 AC106754.2-201ENST00000623006 233 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 AC090574.1-201ENST00000623186 233 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.91□□□□□ -2.26
SCN2AQ99250 Y_RNA.541-201ENST00000384640 113 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 Y_RNA.551-201ENST00000384661 102 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 RNA5SP511-201ENST00000410487 115 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 AL135790.2-201ENST00000437701 267 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 POLR2KP2-201ENST00000438155 177 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 RN7SKP295-201ENST00000517264 153 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.91□□□□□ -2.26
SCN2AQ99250 SNORD113-5-201ENST00000607261 78 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 AC108706.1-201ENST00000611053 297 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 Y_RNA.804-201ENST00000615262 101 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 AL591926.4-201ENST00000616895 298 ntBASIC0.91□□□□□ -2.26
SCN2AQ99250 MIR532-201ENST00000385025 91 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 U8.16-201ENST00000391279 133 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.9□□□□□ -2.27
SCN2AQ99250 RNU6-408P-201ENST00000515910 100 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 RNU6-475P-201ENST00000516073 104 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 SNORD116-28-201ENST00000516123 91 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 RNU7-28P-201ENST00000516759 62 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.9□□□□□ -2.27
SCN2AQ99250 AC109810.1-201ENST00000534066 224 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 CYP3A52P-201ENST00000563326 91 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.9□□□□□ -2.27
SCN2AQ99250 MIR6857-201ENST00000613267 93 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 AL442644.1-201ENST00000454390 3105 ntBASIC0.9□□□□□ -2.27
SCN2AQ99250 RNU1-124P-201ENST00000363861 145 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 Y_RNA.813-201ENST00000364639 102 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 SNORD63-201ENST00000384262 68 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 SNORA25-201ENST00000384384 134 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 RNU6-1009P-201ENST00000390996 107 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 RNU6-159P-201ENST00000391080 106 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 MIR1185-1-201ENST00000408598 86 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 Y_RNA.592-201ENST00000410274 109 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.89□□□□□ -2.27
SCN2AQ99250 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.89□□□□□ -2.27
SCN2AQ99250 HSPE1P25-201ENST00000455484 251 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 RNU6-437P-201ENST00000459408 95 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.89□□□□□ -2.27
SCN2AQ99250 RNU7-12P-201ENST00000516030 62 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 MIR4698-201ENST00000577795 80 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 AC113195.1-201ENST00000579952 141 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 MIR3171-201ENST00000584270 74 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 Y_RNA.138-201ENST00000363462 102 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 Y_RNA.152-201ENST00000363578 100 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 Y_RNA.253-201ENST00000364562 112 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 Y_RNA.498-201ENST00000384460 102 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 MIR215-201ENST00000384858 110 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 MIR873-201ENST00000401120 77 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 AL034345.1-201ENST00000407768 123 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 U8.19-201ENST00000459095 133 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 RNU6-155P-201ENST00000516347 100 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 DEFB108E-201ENST00000524692 240 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 MIR3145-201ENST00000580727 82 ntBASIC0.89□□□□□ -2.27
SCN2AQ99250 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
SCN2AQ99250 Y_RNA.341-201ENST00000365341 102 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 RNU6-1264P-201ENST00000383891 107 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 MIR19B1-201ENST00000384829 87 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 MIR526A1-201ENST00000384897 85 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 AC093850.1-201ENST00000454121 251 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 RNU7-141P-201ENST00000459304 62 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 AC048334.1-201ENST00000477975 159 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 RPS23P4-201ENST00000487908 423 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 AC114811.1-201ENST00000507207 168 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 Y_RNA.374-201ENST00000365606 101 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 Y_RNA.439-201ENST00000384119 94 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 RNU6-917P-201ENST00000516294 104 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 RNU6-1046P-201ENST00000516538 107 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 AC005357.1-201ENST00000588399 301 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 AC037487.3-201ENST00000606668 112 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 AC013791.1-201ENST00000616619 62 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 SEPT14P17-201ENST00000617978 177 ntBASIC0.88□□□□□ -2.27
SCN2AQ99250 AC068700.1-201ENST00000565862 3754 ntBASIC0.87□□□□□ -2.27
SCN2AQ99250 Y_RNA.172-201ENST00000363765 102 ntBASIC0.87□□□□□ -2.27
SCN2AQ99250 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.87□□□□□ -2.27
SCN2AQ99250 RNU6-922P-201ENST00000516753 99 ntBASIC0.87□□□□□ -2.27
SCN2AQ99250 RNU2-56P-201ENST00000516826 190 ntBASIC0.87□□□□□ -2.27
SCN2AQ99250 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.87□□□□□ -2.27
SCN2AQ99250 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.87□□□□□ -2.27
SCN2AQ99250 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.87□□□□□ -2.27
SCN2AQ99250 Y_RNA.772-201ENST00000606692 102 ntBASIC0.87□□□□□ -2.27
SCN2AQ99250 AL021879.1-201ENST00000611756 288 ntBASIC0.87□□□□□ -2.27
SCN2AQ99250 AC073349.3-201ENST00000617616 186 ntBASIC0.87□□□□□ -2.27
SCN2AQ99250 Y_RNA.336-201ENST00000365307 109 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 Y_RNA.356-201ENST00000365475 113 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 RNY1P4-201ENST00000384595 115 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
SCN2AQ99250 Y_RNA.581-201ENST00000391017 97 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 AL160004.2-201ENST00000432935 350 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 HMGN1P10-201ENST00000474557 553 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.86□□□□□ -2.27
SCN2AQ99250 RNU7-115P-201ENST00000516433 55 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 MIR5692C2-201ENST00000577959 77 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.86□□□□□ -2.27
SCN2AQ99250 Pinc.1-201ENST00000616452 154 ntBASIC0.86□□□□□ -2.27
SCN2AQ99250 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
SCN2AQ99250 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.86□□□□□ -2.27
SCN2AQ99250 RNU6-797P-201ENST00000363101 109 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 142.1 ms