Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RNU6-94P-201ENST00000607728 107 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 AL136317.1-201ENST00000612653 226 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 AC090517.2-201ENST00000614966 680 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 AC243994.1-201ENST00000618627 109 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 7SK.10-201ENST00000621414 298 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 MIR3688-2-201ENST00000636963 87 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 RNU6-369P-201ENST00000362515 102 ntBASIC0.29□□□□□ -2.36
LMX1AQ8TE12 RNU6-1237P-201ENST00000384777 107 ntBASIC0.29□□□□□ -2.36
LMX1AQ8TE12 RNU6-613P-201ENST00000410412 108 ntBASIC0.29□□□□□ -2.36
LMX1AQ8TE12 AC092423.1-201ENST00000430165 186 ntBASIC0.29□□□□□ -2.36
LMX1AQ8TE12 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.29□□□□□ -2.36
LMX1AQ8TE12 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC0.29□□□□□ -2.36
LMX1AQ8TE12 AC104695.3-201ENST00000604052 296 ntBASIC0.29□□□□□ -2.36
LMX1AQ8TE12 AC087588.2-201ENST00000617667 426 ntBASIC0.29□□□□□ -2.36
LMX1AQ8TE12 AC092794.2-201ENST00000620933 563 ntBASIC0.29□□□□□ -2.36
LMX1AQ8TE12 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
LMX1AQ8TE12 RNU6-654P-201ENST00000364373 107 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 snoU2-30.1-201ENST00000365012 70 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 RNU6-580P-201ENST00000365159 107 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 SNORD105-201ENST00000386910 85 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.621-201ENST00000411065 96 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 RNU6-177P-201ENST00000411257 104 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 MTND4P28-201ENST00000426217 387 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 SNRPGP10-201ENST00000432323 225 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 AL353997.1-201ENST00000432936 108 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 RPS3AP52-201ENST00000435639 297 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 HMGN2P32-201ENST00000444648 269 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 RPL7P42-201ENST00000481005 679 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.28□□□□□ -2.36
LMX1AQ8TE12 RNU6-436P-201ENST00000516171 114 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 RNU6-830P-201ENST00000516353 107 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 AL355375.2-201ENST00000574825 175 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 MIR548AR-201ENST00000582191 57 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 AC005972.2-201ENST00000604690 348 ntBASIC0.28□□□□□ -2.36
LMX1AQ8TE12 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.368-201ENST00000365547 113 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 SNORA72-201ENST00000384339 132 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 RNA5SP63-201ENST00000391225 112 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 MIR548F5-201ENST00000408421 86 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 MTND3P8-201ENST00000412909 339 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 SNRPGP14-201ENST00000435400 219 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 MTND3P10-201ENST00000450967 341 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 AC002350.1-201ENST00000490759 375 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 AC011195.1-201ENST00000578177 177 ntBASIC0.27□□□□□ -2.37
LMX1AQ8TE12 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.27□□□□□ -2.37
LMX1AQ8TE12 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.26□□□□□ -2.37
LMX1AQ8TE12 RNU6-1084P-201ENST00000362498 107 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.168-201ENST00000363740 102 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 RNU6-601P-201ENST00000384540 107 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 SNORD28B-201ENST00000390993 75 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 AL390729.2-201ENST00000416137 156 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 MTCO2P27-201ENST00000420740 428 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.26□□□□□ -2.37
LMX1AQ8TE12 AC067940.1-201ENST00000458411 300 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 SNORA68.3-201ENST00000515906 83 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.681-201ENST00000516445 113 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 RNU6-966P-201ENST00000516479 104 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 AC006380.1-201ENST00000603598 186 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 MIR1244-1-201ENST00000612829 85 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.26□□□□□ -2.37
LMX1AQ8TE12 MIR1244-3-201ENST00000635744 85 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 MIR4251-201ENST00000635819 61 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 MIR1244-2-201ENST00000636449 85 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 MIR1244-4-202ENST00000636813 85 ntBASIC0.26□□□□□ -2.37
LMX1AQ8TE12 AC090625.1-201ENST00000357130 210 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.3-201ENST00000362331 103 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.88-201ENST00000363029 99 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 RNU4-67P-201ENST00000364569 141 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 RNU6-99P-201ENST00000364721 107 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.370-201ENST00000365589 108 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 RNU6-1323P-201ENST00000384025 107 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.453-201ENST00000384223 109 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 RNY3P4-201ENST00000384428 101 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.577-201ENST00000384794 101 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 RNU6-131P-201ENST00000391144 107 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 SNORA75.4-201ENST00000391278 119 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.592-201ENST00000410274 109 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.25□□□□□ -2.37
LMX1AQ8TE12 CHEK2P4-201ENST00000450340 246 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 MIR2053-201ENST00000459295 91 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.25□□□□□ -2.37
LMX1AQ8TE12 AC093534.1-201ENST00000504977 132 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.25□□□□□ -2.37
LMX1AQ8TE12 AC080013.6-201ENST00000606185 215 ntBASIC0.25□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.146-201ENST00000363549 102 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.446-201ENST00000384178 104 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 Y_RNA.516-201ENST00000384541 124 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 MT-TN-201ENST00000387400 73 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 RNA5SP95-201ENST00000410319 137 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 RNA5SP222-201ENST00000411039 105 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 MLLT10P1-201ENST00000418346 262 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.24□□□□□ -2.37
LMX1AQ8TE12 AC107399.1-201ENST00000451226 265 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 RNA5SP134-201ENST00000516492 96 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 MIR2115-201ENST00000516657 100 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 RNU6-307P-201ENST00000516743 106 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 AC022441.3-201ENST00000605737 136 ntBASIC0.24□□□□□ -2.37
LMX1AQ8TE12 AC002553.4-201ENST00000616896 331 ntBASIC0.24□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms