Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
BEST3Q8N1M1 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
BEST3Q8N1M1 AC134026.1-201ENST00000623249 2239 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
BEST3Q8N1M1 RNU6-1289P-201ENST00000384431 106 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 Y_RNA.562-201ENST00000384695 113 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 SNORA36B-201ENST00000410438 131 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.59□□□□□ -2.15
BEST3Q8N1M1 BTF3P11-201ENST00000426582 477 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 AC108667.1-201ENST00000428618 249 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 RPL39P38-201ENST00000467018 153 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 OR9P1P-201ENST00000496431 281 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 AC004817.2-201ENST00000561794 651 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 MIR4255-201ENST00000579351 72 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 AC062037.2-201ENST00000610137 73 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 AC021506.2-201ENST00000612354 169 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 AC013791.1-201ENST00000616619 62 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 AC073349.3-201ENST00000617616 186 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 snoU18.1-201ENST00000629629 71 ntBASIC1.59□□□□□ -2.15
BEST3Q8N1M1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.59□□□□□ -2.16
BEST3Q8N1M1 RNU6-457P-201ENST00000363999 107 ntBASIC1.58□□□□□ -2.16
BEST3Q8N1M1 RNU4-41P-201ENST00000364426 143 ntBASIC1.58□□□□□ -2.16
BEST3Q8N1M1 RNU6-740P-201ENST00000364734 105 ntBASIC1.58□□□□□ -2.16
BEST3Q8N1M1 RPL30P13-201ENST00000418873 348 ntBASIC1.58□□□□□ -2.16
BEST3Q8N1M1 AC099513.1-201ENST00000490423 301 ntBASIC1.58□□□□□ -2.16
BEST3Q8N1M1 MIR5692C2-201ENST00000577959 77 ntBASIC1.58□□□□□ -2.16
BEST3Q8N1M1 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.58□□□□□ -2.16
BEST3Q8N1M1 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.58□□□□□ -2.16
BEST3Q8N1M1 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.58□□□□□ -2.16
BEST3Q8N1M1 RNU6-1123P-201ENST00000362347 106 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 RNU6-1205P-201ENST00000363625 106 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.203-201ENST00000364106 102 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.350-201ENST00000365409 98 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 RNU6-574P-201ENST00000384265 107 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 SNORA12.1-201ENST00000390873 148 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 AL603910.2-201ENST00000407268 136 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 RPL31P63-201ENST00000422565 375 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 Z98949.2-201ENST00000440996 144 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 PGBD4P5-201ENST00000445958 426 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 RNU6-437P-201ENST00000459408 95 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.57□□□□□ -2.16
BEST3Q8N1M1 MIR3198-2-201ENST00000577868 80 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 SNORA77B-201ENST00000578179 125 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 MIR2681-201ENST00000581814 105 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 AC005357.1-201ENST00000588399 301 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 AL513423.1-201ENST00000621695 132 ntBASIC1.57□□□□□ -2.16
BEST3Q8N1M1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
BEST3Q8N1M1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.57□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.82-201ENST00000363000 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.92-201ENST00000363043 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.117-201ENST00000363294 101 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 RNU6-674P-201ENST00000363831 107 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.235-201ENST00000364412 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.253-201ENST00000364562 112 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.306-201ENST00000365015 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.312-201ENST00000365089 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.322-201ENST00000365151 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 RNU6-203P-201ENST00000384038 104 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 MIR194-1-201ENST00000384892 85 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 AC004965.1-201ENST00000413033 213 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 AL161935.2-201ENST00000414627 60 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.650-201ENST00000459002 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 HMGN1P7-201ENST00000491722 313 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.777-201ENST00000516982 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.56□□□□□ -2.16
BEST3Q8N1M1 MIR3618-201ENST00000580330 88 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.771-201ENST00000598668 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 AL008718.3-201ENST00000610217 321 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 AL591926.4-201ENST00000616895 298 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.789-201ENST00000622480 102 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 AC095038.3-201ENST00000634439 195 ntBASIC1.56□□□□□ -2.16
BEST3Q8N1M1 MIR424-201ENST00000362227 98 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 MIR126-201ENST00000362291 85 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 SNORD68-201ENST00000363214 84 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.416-201ENST00000384014 113 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 RNU6-211P-201ENST00000384047 107 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.478-201ENST00000384358 107 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.590-201ENST00000410140 107 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 snoU13.9-201ENST00000458927 103 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 AC008834.1-201ENST00000511612 175 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.714-201ENST00000517065 90 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 MIR4762-201ENST00000585261 75 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 BX284668.6-201ENST00000606899 438 ntBASIC1.55□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.54-201ENST00000362766 105 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 U8.5-201ENST00000364528 136 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 RNU6-424P-201ENST00000384367 105 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 SNORD2.1-201ENST00000458762 69 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.679-201ENST00000516416 91 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 RNA5SP168-201ENST00000516642 112 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.54□□□□□ -2.16
BEST3Q8N1M1 MIR5688-201ENST00000580619 83 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 MIR4282-201ENST00000583613 67 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 JPX_2.1-201ENST00000614161 69 ntBASIC1.54□□□□□ -2.16
BEST3Q8N1M1 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.122-201ENST00000363331 96 ntBASIC1.53□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.277-201ENST00000364754 102 ntBASIC1.53□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.293-201ENST00000364908 93 ntBASIC1.53□□□□□ -2.16
BEST3Q8N1M1 Y_RNA.338-201ENST00000365320 114 ntBASIC1.53□□□□□ -2.16
BEST3Q8N1M1 CALM2P4-201ENST00000430810 426 ntBASIC1.53□□□□□ -2.16
BEST3Q8N1M1 SNRPGP10-201ENST00000432323 225 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 199.7 ms