Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 RNY4P14-201ENST00000363656 96 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 RNU6-324P-201ENST00000363957 106 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 RNU4-45P-201ENST00000365469 141 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 Y_RNA.376-201ENST00000365638 108 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 RNU2-54P-201ENST00000410299 190 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 MTCO3P10-201ENST00000455912 772 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 AC108740.1-201ENST00000498629 225 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 AC116353.2-201ENST00000505332 712 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 RNA5SP480-201ENST00000516840 109 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 MIR1244-1-201ENST00000612829 85 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 AC240442.1-201ENST00000616055 283 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 MIR1244-3-201ENST00000635744 85 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 MIR1244-2-201ENST00000636449 85 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 MIR1244-4-202ENST00000636813 85 ntBASIC0.17□□□□□ -2.38
ZNF404Q494X3 Y_RNA.41-201ENST00000362646 102 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 Y_RNA.101-201ENST00000363154 102 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 Y_RNA.517-201ENST00000384551 106 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 RPS3AP52-201ENST00000435639 297 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.16□□□□□ -2.38
ZNF404Q494X3 RPL7P42-201ENST00000481005 679 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 AC093534.1-201ENST00000504977 132 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 AC011352.1-201ENST00000512300 793 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 RNU6-977P-201ENST00000516411 103 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.16□□□□□ -2.38
ZNF404Q494X3 MIR3612-201ENST00000579753 87 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 AC005730.3-201ENST00000583067 366 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 AC103591.3-201ENST00000608684 209 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 AC092794.2-201ENST00000620933 563 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 AC092634.7-201ENST00000621022 103 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 MIR924-201ENST00000638017 53 ntBASIC0.16□□□□□ -2.38
ZNF404Q494X3 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.16□□□□□ -2.38
ZNF404Q494X3 MIR377-201ENST00000362145 69 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 RNU6-926P-201ENST00000384075 107 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 SNORA51.10-201ENST00000384418 136 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 MIR570-201ENST00000384917 97 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 MIR2053-201ENST00000459295 91 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 NDUFA4P2-201ENST00000489989 244 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.15□□□□□ -2.39
ZNF404Q494X3 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.15□□□□□ -2.39
ZNF404Q494X3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.15□□□□□ -2.39
ZNF404Q494X3 RNU6-1012P-201ENST00000516606 109 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 AC005899.2-201ENST00000584353 90 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
ZNF404Q494X3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.15□□□□□ -2.39
ZNF404Q494X3 RNU6-349P-201ENST00000362402 107 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 RNU6-601P-201ENST00000384540 107 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 Y_RNA.573-201ENST00000384763 105 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 MT-TN-201ENST00000387400 73 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 RNU6-192P-201ENST00000391253 100 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 MIR548K-201ENST00000408406 116 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 MIR548F5-201ENST00000408421 86 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 MTCO2P27-201ENST00000420740 428 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.14□□□□□ -2.39
ZNF404Q494X3 snoU13.21-201ENST00000459368 105 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 RPL17P19-201ENST00000489069 552 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.14□□□□□ -2.39
ZNF404Q494X3 RNU6-155P-201ENST00000516347 100 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 RNU6-307P-201ENST00000516743 106 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.14□□□□□ -2.39
ZNF404Q494X3 MIR1273G-201ENST00000577677 100 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 MIR548AO-201ENST00000579992 96 ntBASIC0.14□□□□□ -2.39
ZNF404Q494X3 MIR103A1-201ENST00000362165 78 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 Y_RNA.295-201ENST00000364918 102 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 RNU6-934P-201ENST00000365154 107 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 RNU6-580P-201ENST00000365159 107 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 RNU6-442P-201ENST00000383968 104 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 Y_RNA.450-201ENST00000384198 113 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 MIR802-201ENST00000390235 94 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 SNORD83.1-201ENST00000411362 77 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 MTND4P28-201ENST00000426217 387 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 FCF1P4-201ENST00000448326 183 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 MTND3P10-201ENST00000450967 341 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 AC024909.2-201ENST00000553035 286 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 MIR4771-2-201ENST00000577758 74 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 MIR4514-201ENST00000581410 57 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 MIR4771-1-201ENST00000582617 74 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 AC087685.1-201ENST00000587507 141 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 AC005176.2-201ENST00000596933 147 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 AC023932.2-201ENST00000603176 175 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 AP000753.3-201ENST00000604083 169 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 Pinc.1-201ENST00000616452 154 ntBASIC0.13□□□□□ -2.39
ZNF404Q494X3 MIR330-201ENST00000362196 94 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 SNORD45.3-201ENST00000363836 72 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 Y_RNA.404-201ENST00000383978 102 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 RNU6-767P-201ENST00000384132 107 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 Y_RNA.537-201ENST00000384626 109 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 Y_RNA.554-201ENST00000384672 102 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 RNU6-205P-201ENST00000390858 107 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 U8.17-201ENST00000391292 132 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 HMGN1P10-201ENST00000474557 553 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.12□□□□□ -2.39
ZNF404Q494X3 RNU6-436P-201ENST00000516171 114 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 RNU6-830P-201ENST00000516353 107 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 RBM11P1-201ENST00000604951 799 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 JPX_2.1-201ENST00000614161 69 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 PISRT1.1-201ENST00000616930 107 ntBASIC0.12□□□□□ -2.39
ZNF404Q494X3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.11□□□□□ -2.39
ZNF404Q494X3 Y_RNA.194-201ENST00000363985 102 ntBASIC0.11□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms