Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNA5SP480-201ENST00000516840 109 ntBASIC0.61□□□□□ -2.31
RFX3P48380 RNU11-2P-201ENST00000516898 142 ntBASIC0.61□□□□□ -2.31
RFX3P48380 MTND4LP26-201ENST00000518144 282 ntBASIC0.61□□□□□ -2.31
RFX3P48380 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.61□□□□□ -2.31
RFX3P48380 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.61□□□□□ -2.31
RFX3P48380 AC104465.1-201ENST00000611365 139 ntBASIC0.61□□□□□ -2.31
RFX3P48380 AC092794.1-201ENST00000612734 582 ntBASIC0.61□□□□□ -2.31
RFX3P48380 AC007742.2-201ENST00000618226 398 ntBASIC0.61□□□□□ -2.31
RFX3P48380 U2.1-201ENST00000618978 145 ntBASIC0.61□□□□□ -2.31
RFX3P48380 Y_RNA.27-201ENST00000362540 103 ntBASIC0.6□□□□□ -2.31
RFX3P48380 SNORD81.2-201ENST00000365153 76 ntBASIC0.6□□□□□ -2.31
RFX3P48380 RNU6-890P-201ENST00000384121 107 ntBASIC0.6□□□□□ -2.31
RFX3P48380 MIR628-201ENST00000385229 95 ntBASIC0.6□□□□□ -2.31
RFX3P48380 RNU6-876P-201ENST00000391295 104 ntBASIC0.6□□□□□ -2.31
RFX3P48380 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.6□□□□□ -2.31
RFX3P48380 Y_RNA.653-201ENST00000459091 95 ntBASIC0.6□□□□□ -2.31
RFX3P48380 MTND4P17-201ENST00000470444 350 ntBASIC0.6□□□□□ -2.31
RFX3P48380 SNORA25.10-201ENST00000515926 124 ntBASIC0.6□□□□□ -2.31
RFX3P48380 AC004812.1-201ENST00000540773 146 ntBASIC0.6□□□□□ -2.31
RFX3P48380 MIR4764-201ENST00000580680 88 ntBASIC0.6□□□□□ -2.31
RFX3P48380 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.6□□□□□ -2.31
RFX3P48380 AC113139.1-201ENST00000605049 239 ntBASIC0.6□□□□□ -2.31
RFX3P48380 AC022441.3-201ENST00000605737 136 ntBASIC0.6□□□□□ -2.31
RFX3P48380 Y_RNA.36-201ENST00000362602 112 ntBASIC0.59□□□□□ -2.31
RFX3P48380 RNU6-490P-201ENST00000362985 107 ntBASIC0.59□□□□□ -2.31
RFX3P48380 RNU6-1323P-201ENST00000384025 107 ntBASIC0.59□□□□□ -2.31
RFX3P48380 RNU6-110P-201ENST00000384508 104 ntBASIC0.59□□□□□ -2.31
RFX3P48380 MIR516B2-201ENST00000385190 85 ntBASIC0.59□□□□□ -2.31
RFX3P48380 U7.7-201ENST00000459276 60 ntBASIC0.59□□□□□ -2.31
RFX3P48380 COX6CP6-201ENST00000490840 228 ntBASIC0.59□□□□□ -2.31
RFX3P48380 RNU6-120P-201ENST00000516077 103 ntBASIC0.59□□□□□ -2.31
RFX3P48380 RNU7-116P-201ENST00000516940 62 ntBASIC0.59□□□□□ -2.31
RFX3P48380 AC004817.2-201ENST00000561794 651 ntBASIC0.59□□□□□ -2.31
RFX3P48380 MIR4659A-201ENST00000580269 81 ntBASIC0.59□□□□□ -2.31
RFX3P48380 MIR4714-201ENST00000580728 77 ntBASIC0.59□□□□□ -2.31
RFX3P48380 AC025627.3-201ENST00000582078 182 ntBASIC0.59□□□□□ -2.31
RFX3P48380 MIR6513-201ENST00000621188 64 ntBASIC0.59□□□□□ -2.31
RFX3P48380 Y_RNA.146-201ENST00000363549 102 ntBASIC0.58□□□□□ -2.32
RFX3P48380 Y_RNA.314-201ENST00000365114 102 ntBASIC0.58□□□□□ -2.32
RFX3P48380 Y_RNA.330-201ENST00000365230 109 ntBASIC0.58□□□□□ -2.32
RFX3P48380 Y_RNA.393-201ENST00000383936 102 ntBASIC0.58□□□□□ -2.32
RFX3P48380 AL390729.2-201ENST00000416137 156 ntBASIC0.58□□□□□ -2.32
RFX3P48380 MCFD2P1-201ENST00000417812 300 ntBASIC0.58□□□□□ -2.32
RFX3P48380 MLLT10P1-201ENST00000418346 262 ntBASIC0.58□□□□□ -2.32
RFX3P48380 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.58□□□□□ -2.32
RFX3P48380 SNRPGP10-201ENST00000432323 225 ntBASIC0.58□□□□□ -2.32
RFX3P48380 RNU7-169P-201ENST00000459456 61 ntBASIC0.58□□□□□ -2.32
RFX3P48380 RN7SKP295-201ENST00000517264 153 ntBASIC0.58□□□□□ -2.32
RFX3P48380 AC131055.1-201ENST00000584626 316 ntBASIC0.58□□□□□ -2.32
RFX3P48380 Y_RNA.172-201ENST00000363765 102 ntBASIC0.57□□□□□ -2.32
RFX3P48380 Y_RNA.248-201ENST00000364501 109 ntBASIC0.57□□□□□ -2.32
RFX3P48380 MIR1185-1-201ENST00000408598 86 ntBASIC0.57□□□□□ -2.32
RFX3P48380 Y_RNA.599-201ENST00000410489 109 ntBASIC0.57□□□□□ -2.32
RFX3P48380 RNU6-733P-201ENST00000410759 104 ntBASIC0.57□□□□□ -2.32
RFX3P48380 AC005042.3-201ENST00000453230 174 ntBASIC0.57□□□□□ -2.32
RFX3P48380 SNORD123-201ENST00000459473 70 ntBASIC0.57□□□□□ -2.32
RFX3P48380 AC113410.1-201ENST00000505029 247 ntBASIC0.57□□□□□ -2.32
RFX3P48380 RNU7-41P-201ENST00000515917 61 ntBASIC0.57□□□□□ -2.32
RFX3P48380 SNORA18.7-201ENST00000516910 131 ntBASIC0.57□□□□□ -2.32
RFX3P48380 AC109810.1-201ENST00000534066 224 ntBASIC0.57□□□□□ -2.32
RFX3P48380 AC023827.1-201ENST00000569247 97 ntBASIC0.57□□□□□ -2.32
RFX3P48380 AC087685.1-201ENST00000587507 141 ntBASIC0.57□□□□□ -2.32
RFX3P48380 VN1R91P-201ENST00000594377 169 ntBASIC0.57□□□□□ -2.32
RFX3P48380 SNORD50B-201ENST00000364995 70 ntBASIC0.56□□□□□ -2.32
RFX3P48380 Y_RNA.370-201ENST00000365589 108 ntBASIC0.56□□□□□ -2.32
RFX3P48380 Y_RNA.456-201ENST00000384232 111 ntBASIC0.56□□□□□ -2.32
RFX3P48380 Y_RNA.474-201ENST00000384341 102 ntBASIC0.56□□□□□ -2.32
RFX3P48380 SNORD111-201ENST00000408139 94 ntBASIC0.56□□□□□ -2.32
RFX3P48380 RPL30P15-201ENST00000457129 321 ntBASIC0.56□□□□□ -2.32
RFX3P48380 RN7SKP164-201ENST00000516138 266 ntBASIC0.56□□□□□ -2.32
RFX3P48380 RNU6-559P-201ENST00000516151 98 ntBASIC0.56□□□□□ -2.32
RFX3P48380 RNU6-1110P-201ENST00000516462 101 ntBASIC0.56□□□□□ -2.32
RFX3P48380 RN7SL793P-201ENST00000583259 296 ntBASIC0.56□□□□□ -2.32
RFX3P48380 AL136317.1-201ENST00000612653 226 ntBASIC0.56□□□□□ -2.32
RFX3P48380 AC138305.3-201ENST00000624988 240 ntBASIC0.56□□□□□ -2.32
RFX3P48380 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.56□□□□□ -2.32
RFX3P48380 RNA5SP347-201ENST00000362445 119 ntBASIC0.55□□□□□ -2.32
RFX3P48380 SNORA25.3-201ENST00000363205 127 ntBASIC0.55□□□□□ -2.32
RFX3P48380 Y_RNA.329-201ENST00000365209 107 ntBASIC0.55□□□□□ -2.32
RFX3P48380 RNU6-1297P-201ENST00000384415 104 ntBASIC0.55□□□□□ -2.32
RFX3P48380 Y_RNA.570-201ENST00000384750 101 ntBASIC0.55□□□□□ -2.32
RFX3P48380 MIR7-2-201ENST00000384970 110 ntBASIC0.55□□□□□ -2.32
RFX3P48380 MIR92A1-201ENST00000385233 78 ntBASIC0.55□□□□□ -2.32
RFX3P48380 AC024067.1-201ENST00000426199 223 ntBASIC0.55□□□□□ -2.32
RFX3P48380 MTCO3P10-201ENST00000455912 772 ntBASIC0.55□□□□□ -2.32
RFX3P48380 AC067940.1-201ENST00000458411 300 ntBASIC0.55□□□□□ -2.32
RFX3P48380 AC098869.1-201ENST00000481627 292 ntBASIC0.55□□□□□ -2.32
RFX3P48380 AC010205.1-201ENST00000616668 449 ntBASIC0.55□□□□□ -2.32
RFX3P48380 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.55□□□□□ -2.32
RFX3P48380 U6.92-201ENST00000636464 89 ntBASIC0.55□□□□□ -2.32
RFX3P48380 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
RFX3P48380 SNORD14E-201ENST00000364009 85 ntBASIC0.54□□□□□ -2.32
RFX3P48380 RNU6-1175P-201ENST00000365200 107 ntBASIC0.54□□□□□ -2.32
RFX3P48380 Y_RNA.341-201ENST00000365341 102 ntBASIC0.54□□□□□ -2.32
RFX3P48380 Y_RNA.368-201ENST00000365547 113 ntBASIC0.54□□□□□ -2.32
RFX3P48380 Y_RNA.387-201ENST00000383918 102 ntBASIC0.54□□□□□ -2.32
RFX3P48380 Y_RNA.462-201ENST00000384268 102 ntBASIC0.54□□□□□ -2.32
RFX3P48380 SNORD38C-201ENST00000384381 69 ntBASIC0.54□□□□□ -2.32
RFX3P48380 MIR216A-201ENST00000385063 110 ntBASIC0.54□□□□□ -2.32
RFX3P48380 MIR559-201ENST00000385188 96 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms