Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-1106P-201ENST00000390845 107 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 AC006210.1-201ENST00000424882 111 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 USP9YP16-201ENST00000430287 407 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 MTCO2P3-201ENST00000442543 421 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 AL137792.2-201ENST00000443484 235 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 AC105417.1-201ENST00000514691 285 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 BNIP3P39-201ENST00000601077 554 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 AC004223.4-201ENST00000612426 332 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 AC023510.2-201ENST00000622162 746 ntBASIC-1.41□□□□□ -2.64
CUX1P39880 SNORA27.1-201ENST00000362604 124 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 Y_RNA.49-201ENST00000362714 112 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 RNU6-227P-201ENST00000362865 103 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 RNU6-117P-201ENST00000365415 107 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 RNU6-723P-201ENST00000383973 107 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 MIR9-2-201ENST00000384838 87 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 MTND1P12-201ENST00000455231 147 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 RNU2-11P-201ENST00000459191 187 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 MTCO2P6-201ENST00000463134 685 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 RNU6-1178P-201ENST00000516674 107 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 Y_RNA.714-201ENST00000517065 90 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 MIR6082-201ENST00000613604 109 ntBASIC-1.42□□□□□ -2.64
CUX1P39880 MIR30D-201ENST00000362283 70 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 SNORD115-44-201ENST00000365391 82 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 MIR558-201ENST00000384920 94 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 NDUFAF4P4-201ENST00000454883 502 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 SNORA25.13-201ENST00000516395 103 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 SNORA25.17-201ENST00000517184 124 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-1.43□□□□□ -2.64
CUX1P39880 AC245297.2-201ENST00000610119 565 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 MIR6851-201ENST00000617060 67 ntBASIC-1.43□□□□□ -2.64
CUX1P39880 RNU4-28P-201ENST00000364739 141 ntBASIC-1.44□□□□□ -2.64
CUX1P39880 RNU6-926P-201ENST00000384075 107 ntBASIC-1.44□□□□□ -2.64
CUX1P39880 RNU6-329P-201ENST00000459618 107 ntBASIC-1.44□□□□□ -2.64
CUX1P39880 MIR3684-201ENST00000579779 74 ntBASIC-1.44□□□□□ -2.64
CUX1P39880 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC-1.44□□□□□ -2.64
CUX1P39880 AC016911.1-201ENST00000613297 452 ntBASIC-1.44□□□□□ -2.64
CUX1P39880 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 Y_RNA.13-201ENST00000362403 112 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 Y_RNA.365-201ENST00000365537 102 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 Y_RNA.533-201ENST00000384596 114 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 MIR518B-201ENST00000385127 83 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 RNA5SP475-201ENST00000410568 110 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 UQCRBP2-201ENST00000447827 297 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 uc_338.10-201ENST00000621872 182 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 AC097460.3-201ENST00000623099 442 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.45□□□□□ -2.64
CUX1P39880 SNORD115-8-201ENST00000363856 82 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 Y_RNA.184-201ENST00000363884 108 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 RNU6-621P-201ENST00000364752 109 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 SNORD115-38-201ENST00000365037 82 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC-1.45□□□□□ -2.64
CUX1P39880 Y_RNA.621-201ENST00000411065 96 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-1.45□□□□□ -2.64
CUX1P39880 AC018865.2-201ENST00000423631 129 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 AC236972.2-201ENST00000434979 310 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-1.45□□□□□ -2.64
CUX1P39880 RNU6-765P-201ENST00000516916 99 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 RNU7-181P-201ENST00000517234 74 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 MTND1P35-201ENST00000526739 508 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 RMST_3.1-201ENST00000611651 109 ntBASIC-1.45□□□□□ -2.64
CUX1P39880 SNORD115-42-201ENST00000364273 82 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 RNU6-119P-201ENST00000364882 107 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 AC022137.1-201ENST00000483735 151 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 AF186996.7-201ENST00000492781 209 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 AC022784.5-201ENST00000522241 437 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 AC073648.5-201ENST00000603502 305 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 AL133255.1-201ENST00000606374 441 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 5S_rRNA.13-201ENST00000622298 123 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 AC126544.2-201ENST00000625174 749 ntBASIC-1.46□□□□□ -2.64
CUX1P39880 Y_RNA.22-201ENST00000362492 102 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 RNU6-403P-201ENST00000363163 104 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 RNY4P7-201ENST00000364600 96 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 RNU6-1303P-201ENST00000364841 107 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 SNORD115-7-201ENST00000365306 82 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 Y_RNA.415-201ENST00000384012 112 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 RNU6-784P-201ENST00000384330 106 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 MIR8485-201ENST00000401372 91 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 AL354751.2-201ENST00000415471 210 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC-1.47□□□□□ -2.64
CUX1P39880 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-1.47□□□□□ -2.64
CUX1P39880 GMFBP1-201ENST00000467831 427 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-1.47□□□□□ -2.64
CUX1P39880 SNORD22.1-201ENST00000516331 125 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 MTND2P32-201ENST00000521584 1038 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 AC138207.3-201ENST00000585289 166 ntBASIC-1.47□□□□□ -2.64
CUX1P39880 RNU6-641P-201ENST00000384006 107 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 RNU6-901P-201ENST00000384593 106 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 RNU6-131P-201ENST00000391144 107 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 AP000533.3-201ENST00000447704 118 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 AC244505.6-201ENST00000452829 130 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-1.48□□□□□ -2.65
CUX1P39880 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.48□□□□□ -2.65
CUX1P39880 HSPE1P23-201ENST00000509838 286 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 RNU6-1332P-201ENST00000516666 104 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 RNU6-612P-201ENST00000516909 102 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC-1.48□□□□□ -2.65
CUX1P39880 MTND5P34-201ENST00000568888 325 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 MIR5591-201ENST00000578248 65 ntBASIC-1.48□□□□□ -2.65
CUX1P39880 AL596211.1-201ENST00000569873 2277 ntBASIC-1.49□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms