Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Prpf40aQ9R1C7 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.66■□□□□ 0.42
Prpf40aQ9R1C7 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Ighv6-1-201ENSMUST00000193612 343 ntBASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Gm33142-201ENSMUST00000193913 867 ntBASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Prpf40aQ9R1C7 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Prpf40aQ9R1C7 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Prpf40aQ9R1C7 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Prpf40aQ9R1C7 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Prpf40aQ9R1C7 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Prpf40aQ9R1C7 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Prpf40aQ9R1C7 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.63■□□□□ 0.41
Prpf40aQ9R1C7 Gm10052-201ENSMUST00000168019 960 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms