Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trim54Q9ERP3 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim54Q9ERP3 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim54Q9ERP3 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trim54Q9ERP3 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim54Q9ERP3 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trim54Q9ERP3 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trim54Q9ERP3 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trim54Q9ERP3 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.33■□□□□ 0.36
Trim54Q9ERP3 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Gm8000-201ENSMUST00000188378 592 ntBASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Gm37935-201ENSMUST00000192012 982 ntBASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trim54Q9ERP3 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Gm36858-201ENSMUST00000194501 2391 ntBASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Gm11594-201ENSMUST00000122313 162 ntBASIC17.32■□□□□ 0.36
Trim54Q9ERP3 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Gm43332-201ENSMUST00000202511 1044 ntBASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim54Q9ERP3 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Gm6550-201ENSMUST00000187574 993 ntBASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim54Q9ERP3 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Psmb5-202ENSMUST00000227257 622 ntBASIC17.3■□□□□ 0.36
Trim54Q9ERP3 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim54Q9ERP3 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim54Q9ERP3 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 29.5 ms