Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf1Q9EPU0 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Upf1Q9EPU0 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Upf1Q9EPU0 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Gm24694-201ENSMUST00000180054 110 ntBASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Gm27663-201ENSMUST00000184839 110 ntBASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 AC122024.2-201ENSMUST00000220086 871 ntBASIC18.14■□□□□ 0.49
Upf1Q9EPU0 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Upf1Q9EPU0 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Gm35558-201ENSMUST00000222675 2219 ntBASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Gm6973-201ENSMUST00000117080 721 ntBASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Gm12091-201ENSMUST00000146791 830 ntBASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Upf1Q9EPU0 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Gm2272-201ENSMUST00000194903 582 ntBASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC18.12■□□□□ 0.49
Upf1Q9EPU0 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Gm2810-201ENSMUST00000118681 990 ntBASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Mir3547-201ENSMUST00000175461 88 ntBASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Gm27680-201ENSMUST00000184192 160 ntBASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Gm28630-201ENSMUST00000187806 498 ntBASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Gm8131-201ENSMUST00000213783 1570 ntBASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Upf1Q9EPU0 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Gm18737-201ENSMUST00000173594 937 ntBASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC18.1■□□□□ 0.49
Upf1Q9EPU0 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Upf1Q9EPU0 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms