Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14.89□□□□□ -0.03
Cdc40Q9DC48 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdc40Q9DC48 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdc40Q9DC48 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Cdc40Q9DC48 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Mzt1-203ENSMUST00000227948 952 ntBASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Cdc40Q9DC48 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms