Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Syne4Q8CII8 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Syne4Q8CII8 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Syne4Q8CII8 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC18.12■□□□□ 0.49
Syne4Q8CII8 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC18.12■□□□□ 0.49
Syne4Q8CII8 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Syne4Q8CII8 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Syne4Q8CII8 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Syne4Q8CII8 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Mir1895-201ENSMUST00000122615 79 ntBASIC18.11■□□□□ 0.49
Syne4Q8CII8 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Syne4Q8CII8 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.1■□□□□ 0.49
Syne4Q8CII8 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Mir7036b-201ENSMUST00000184791 63 ntBASIC18.1■□□□□ 0.49
Syne4Q8CII8 Gm9682-201ENSMUST00000197505 556 ntBASIC18.1■□□□□ 0.49
Syne4Q8CII8 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Syne4Q8CII8 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Gm13616-201ENSMUST00000120600 222 ntBASIC18.09■□□□□ 0.49
Syne4Q8CII8 Gm13597-201ENSMUST00000121239 375 ntBASIC18.09■□□□□ 0.49
Syne4Q8CII8 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Syne4Q8CII8 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Syne4Q8CII8 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Syne4Q8CII8 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Syne4Q8CII8 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Syne4Q8CII8 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Syne4Q8CII8 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Syne4Q8CII8 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Syne4Q8CII8 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Syne4Q8CII8 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.08■□□□□ 0.48
Syne4Q8CII8 AC151836.1-202ENSMUST00000226259 753 ntBASIC18.08■□□□□ 0.48
Syne4Q8CII8 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Syne4Q8CII8 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
Syne4Q8CII8 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Syne4Q8CII8 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms