Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ccdc28aQ8CEI3 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Ccdc28aQ8CEI3 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ccdc28aQ8CEI3 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Ccdc28aQ8CEI3 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Ccdc28aQ8CEI3 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Ccdc28aQ8CEI3 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Ccdc28aQ8CEI3 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Ccdc28aQ8CEI3 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC16.96■□□□□ 0.3
Ccdc28aQ8CEI3 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Ccdc28aQ8CEI3 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Mir5122-201ENSMUST00000175004 89 ntBASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Gm8520-201ENSMUST00000186517 868 ntBASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 AC135963.1-201ENSMUST00000211640 717 ntBASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Ccdc28aQ8CEI3 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 AC163637.1-201ENSMUST00000215491 1894 ntBASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Gm11336-201ENSMUST00000118168 334 ntBASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Ccdc28aQ8CEI3 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Gm13474-201ENSMUST00000122466 815 ntBASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Ccdc28aQ8CEI3 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms