Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Nup88Q8CEC0 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Nup88Q8CEC0 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Gm15794-201ENSMUST00000120182 631 ntBASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Nup88Q8CEC0 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Nup88Q8CEC0 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Gm16011-201ENSMUST00000121567 2662 ntBASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Nup88Q8CEC0 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Nup88Q8CEC0 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Nup88Q8CEC0 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Nup88Q8CEC0 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Gm13186-201ENSMUST00000118031 316 ntBASIC18.89■□□□□ 0.61
Nup88Q8CEC0 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 151.6 ms