Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC18.91■□□□□ 0.62
Trim56Q80VI1 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC18.91■□□□□ 0.62
Trim56Q80VI1 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC18.91■□□□□ 0.62
Trim56Q80VI1 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.91■□□□□ 0.62
Trim56Q80VI1 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Trim56Q80VI1 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC18.9■□□□□ 0.62
Trim56Q80VI1 Gm13830-205ENSMUST00000201195 1155 ntBASIC18.9■□□□□ 0.62
Trim56Q80VI1 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Gm6296-201ENSMUST00000222599 943 ntBASIC18.9■□□□□ 0.62
Trim56Q80VI1 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim56Q80VI1 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trim56Q80VI1 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trim56Q80VI1 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trim56Q80VI1 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Trim56Q80VI1 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trim56Q80VI1 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trim56Q80VI1 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trim56Q80VI1 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Gm5864-201ENSMUST00000202263 970 ntBASIC18.89■□□□□ 0.61
Trim56Q80VI1 Gm7461-201ENSMUST00000058918 827 ntBASIC18.89■□□□□ 0.61
Trim56Q80VI1 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Gm44729-201ENSMUST00000206759 2052 ntBASIC18.89■□□□□ 0.61
Trim56Q80VI1 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim56Q80VI1 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Gm11452-201ENSMUST00000122376 690 ntBASIC18.88■□□□□ 0.61
Trim56Q80VI1 Gm9172-201ENSMUST00000212092 954 ntBASIC18.88■□□□□ 0.61
Trim56Q80VI1 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trim56Q80VI1 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Gm9954-202ENSMUST00000198686 4725 ntBASIC18.87■□□□□ 0.61
Trim56Q80VI1 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.87■□□□□ 0.61
Trim56Q80VI1 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms