Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Gm4899-201ENSMUST00000178708 719 ntBASIC20.77■□□□□ 0.92
Trim28Q62318 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC20.77■□□□□ 0.92
Trim28Q62318 Gm45167-201ENSMUST00000208007 322 ntBASIC20.77■□□□□ 0.92
Trim28Q62318 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Trim28Q62318 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim28Q62318 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.77■□□□□ 0.91
Trim28Q62318 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC20.76■□□□□ 0.91
Trim28Q62318 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Trim28Q62318 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Trim28Q62318 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Trim28Q62318 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Trim28Q62318 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim28Q62318 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Gm43072-201ENSMUST00000200283 1671 ntBASIC20.75■□□□□ 0.91
Trim28Q62318 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trim28Q62318 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Trim28Q62318 Gm11185-201ENSMUST00000117732 1007 ntBASIC20.75■□□□□ 0.91
Trim28Q62318 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Trim28Q62318 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trim28Q62318 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC20.75■□□□□ 0.91
Trim28Q62318 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Gm11873-201ENSMUST00000117877 1304 ntBASIC20.75■□□□□ 0.91
Trim28Q62318 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim28Q62318 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Gm4995-201ENSMUST00000117247 432 ntBASIC20.74■□□□□ 0.91
Trim28Q62318 Gm14494-201ENSMUST00000118786 435 ntBASIC20.74■□□□□ 0.91
Trim28Q62318 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC20.74■□□□□ 0.91
Trim28Q62318 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC20.74■□□□□ 0.91
Trim28Q62318 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC20.74■□□□□ 0.91
Trim28Q62318 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC20.74■□□□□ 0.91
Trim28Q62318 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Trim28Q62318 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim28Q62318 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC20.73■□□□□ 0.91
Trim28Q62318 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC20.73■□□□□ 0.91
Trim28Q62318 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC20.73■□□□□ 0.91
Trim28Q62318 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Trim28Q62318 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim28Q62318 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC20.72■□□□□ 0.91
Trim28Q62318 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim28Q62318 Gm37935-201ENSMUST00000192012 982 ntBASIC20.72■□□□□ 0.91
Trim28Q62318 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim28Q62318 AC122024.2-201ENSMUST00000220086 871 ntBASIC20.72■□□□□ 0.91
Trim28Q62318 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms