Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC17.7■□□□□ 0.42
CtcfQ61164 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CtcfQ61164 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CtcfQ61164 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CtcfQ61164 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC17.69■□□□□ 0.42
CtcfQ61164 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CtcfQ61164 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CtcfQ61164 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC17.68■□□□□ 0.42
CtcfQ61164 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Gm13559-201ENSMUST00000120476 863 ntBASIC17.68■□□□□ 0.42
CtcfQ61164 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.68■□□□□ 0.42
CtcfQ61164 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Gm7889-201ENSMUST00000185591 958 ntBASIC17.68■□□□□ 0.42
CtcfQ61164 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CtcfQ61164 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CtcfQ61164 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
CtcfQ61164 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.67■□□□□ 0.42
CtcfQ61164 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC17.67■□□□□ 0.42
CtcfQ61164 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.67■□□□□ 0.42
CtcfQ61164 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CtcfQ61164 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CtcfQ61164 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.66■□□□□ 0.42
CtcfQ61164 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Gm11336-201ENSMUST00000118168 334 ntBASIC17.66■□□□□ 0.42
CtcfQ61164 Gm15565-201ENSMUST00000118890 427 ntBASIC17.66■□□□□ 0.42
CtcfQ61164 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Gm2274-201ENSMUST00000184539 609 ntBASIC17.66■□□□□ 0.42
CtcfQ61164 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC17.66■□□□□ 0.42
CtcfQ61164 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CtcfQ61164 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CtcfQ61164 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms