Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Trav3-1Q5R1I8 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Gm43592-201ENSMUST00000196922 1165 ntBASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 AC107452.1-201ENSMUST00000227963 481 ntBASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Gm44729-201ENSMUST00000206759 2052 ntBASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 AC125311.2-201ENSMUST00000227477 1940 ntBASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Trav3-1Q5R1I8 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Gm13034-201ENSMUST00000121342 3177 ntBASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Gm42748-201ENSMUST00000199354 2341 ntBASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Gm12500-202ENSMUST00000186471 2428 ntBASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 App-207ENSMUST00000227737 2827 ntBASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC10.87□□□□□ -0.67
Trav3-1Q5R1I8 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Trav3-1Q5R1I8 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms