Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col27a1Q5QNQ9 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col27a1Q5QNQ9 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.4■□□□□ 0.06
Col27a1Q5QNQ9 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Col27a1Q5QNQ9 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col27a1Q5QNQ9 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Col27a1Q5QNQ9 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 Gm42939-201ENSMUST00000197514 2205 ntBASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col27a1Q5QNQ9 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Gm2810-201ENSMUST00000118681 990 ntBASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Bet1l-209ENSMUST00000211624 769 ntTSL 3 BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col27a1Q5QNQ9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Gm6973-201ENSMUST00000117080 721 ntBASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Gm44855-201ENSMUST00000205725 362 ntBASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Dmtn-207ENSMUST00000228001 2437 ntBASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC15.37■□□□□ 0.05
Col27a1Q5QNQ9 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Gm5184-201ENSMUST00000220417 1702 ntBASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Gm37194-201ENSMUST00000193092 3031 ntBASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Cdk7-205ENSMUST00000225990 1159 ntBASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col27a1Q5QNQ9 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Gm13453-201ENSMUST00000118708 357 ntBASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Gm27680-201ENSMUST00000184192 160 ntBASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col27a1Q5QNQ9 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms