Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Gm19430-201ENSMUST00000193847 2137 ntBASIC18.88■□□□□ 0.61
Limch1Q3UH68 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Birc2-201ENSMUST00000054878 378 ntBASIC18.88■□□□□ 0.61
Limch1Q3UH68 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Limch1Q3UH68 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Mzt1-203ENSMUST00000227948 952 ntBASIC18.87■□□□□ 0.61
Limch1Q3UH68 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Limch1Q3UH68 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.86■□□□□ 0.61
Limch1Q3UH68 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC18.86■□□□□ 0.61
Limch1Q3UH68 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.86■□□□□ 0.61
Limch1Q3UH68 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Limch1Q3UH68 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Limch1Q3UH68 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Limch1Q3UH68 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Limch1Q3UH68 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms