Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col9a1Q05722 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Col9a1Q05722 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col9a1Q05722 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC15.68■□□□□ 0.1
Col9a1Q05722 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col9a1Q05722 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col9a1Q05722 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col9a1Q05722 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col9a1Q05722 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col9a1Q05722 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col9a1Q05722 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col9a1Q05722 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC15.67■□□□□ 0.1
Col9a1Q05722 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC15.67■□□□□ 0.1
Col9a1Q05722 Gm45696-201ENSMUST00000212088 985 ntBASIC15.67■□□□□ 0.1
Col9a1Q05722 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC15.67■□□□□ 0.1
Col9a1Q05722 Gm7787-201ENSMUST00000216858 688 ntBASIC15.67■□□□□ 0.1
Col9a1Q05722 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Col9a1Q05722 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Col9a1Q05722 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col9a1Q05722 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col9a1Q05722 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Col9a1Q05722 Gm8131-201ENSMUST00000213783 1570 ntBASIC15.66■□□□□ 0.1
Col9a1Q05722 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col9a1Q05722 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Gm25287-201ENSMUST00000103846 110 ntBASIC15.66■□□□□ 0.1
Col9a1Q05722 Gm22918-201ENSMUST00000103855 110 ntBASIC15.66■□□□□ 0.1
Col9a1Q05722 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC15.66■□□□□ 0.1
Col9a1Q05722 Gm13366-201ENSMUST00000122198 970 ntBASIC15.66■□□□□ 0.1
Col9a1Q05722 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.66■□□□□ 0.1
Col9a1Q05722 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Col9a1Q05722 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC15.66■□□□□ 0.1
Col9a1Q05722 4930405J17Rik-201ENSMUST00000214323 620 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 AC131710.1-201ENSMUST00000228336 990 ntBASIC15.66■□□□□ 0.1
Col9a1Q05722 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Col9a1Q05722 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC15.66■□□□□ 0.1
Col9a1Q05722 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col9a1Q05722 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col9a1Q05722 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col9a1Q05722 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC15.65■□□□□ 0.1
Col9a1Q05722 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC15.65■□□□□ 0.1
Col9a1Q05722 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.65■□□□□ 0.1
Col9a1Q05722 B430010I23Rik-202ENSMUST00000152188 1168 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col9a1Q05722 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col9a1Q05722 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Gm8349-201ENSMUST00000182720 1003 ntBASIC15.65■□□□□ 0.1
Col9a1Q05722 Gm42726-201ENSMUST00000202274 1286 ntTSL 5 BASIC15.65■□□□□ 0.1
Col9a1Q05722 Gm6888-201ENSMUST00000221983 706 ntBASIC15.65■□□□□ 0.1
Col9a1Q05722 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col9a1Q05722 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col9a1Q05722 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col9a1Q05722 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col9a1Q05722 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Col9a1Q05722 Gm12329-201ENSMUST00000120829 1007 ntBASIC15.64■□□□□ 0.09
Col9a1Q05722 Gm15487-201ENSMUST00000122373 465 ntBASIC15.64■□□□□ 0.09
Col9a1Q05722 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col9a1Q05722 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms