Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdh11P55288 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdh11P55288 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdh11P55288 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Cdh11P55288 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Cdh11P55288 Spsb2-203ENSMUST00000112473 1322 ntBASIC14.66□□□□□ -0.06
Cdh11P55288 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Cdh11P55288 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC14.66□□□□□ -0.06
Cdh11P55288 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Cdh11P55288 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC14.66□□□□□ -0.06
Cdh11P55288 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Cdh11P55288 Gm18958-201ENSMUST00000174258 762 ntBASIC14.66□□□□□ -0.06
Cdh11P55288 Gm6345-202ENSMUST00000180900 204 ntBASIC14.66□□□□□ -0.06
Cdh11P55288 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC14.66□□□□□ -0.06
Cdh11P55288 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC14.66□□□□□ -0.06
Cdh11P55288 Gm7213-201ENSMUST00000215977 950 ntBASIC14.66□□□□□ -0.06
Cdh11P55288 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Cdh11P55288 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC14.66□□□□□ -0.06
Cdh11P55288 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Cdh11P55288 Ptprs-211ENSMUST00000223859 5588 ntBASIC14.66□□□□□ -0.06
Cdh11P55288 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Cdh11P55288 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC14.65□□□□□ -0.06
Cdh11P55288 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Cdh11P55288 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC14.65□□□□□ -0.06
Cdh11P55288 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Cdh11P55288 Gm21559-201ENSMUST00000220638 855 ntBASIC14.65□□□□□ -0.06
Cdh11P55288 Gm8587-201ENSMUST00000076538 843 ntBASIC14.65□□□□□ -0.06
Cdh11P55288 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Cdh11P55288 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Cdh11P55288 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cdh11P55288 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Cdh11P55288 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Cdh11P55288 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Cdh11P55288 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Cdh11P55288 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC14.64□□□□□ -0.07
Cdh11P55288 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC14.64□□□□□ -0.07
Cdh11P55288 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Cdh11P55288 Mir1668-201ENSMUST00000184114 107 ntBASIC14.64□□□□□ -0.07
Cdh11P55288 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC14.64□□□□□ -0.07
Cdh11P55288 Gm33142-201ENSMUST00000193913 867 ntBASIC14.64□□□□□ -0.07
Cdh11P55288 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC14.64□□□□□ -0.07
Cdh11P55288 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC14.64□□□□□ -0.07
Cdh11P55288 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdh11P55288 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC14.64□□□□□ -0.07
Cdh11P55288 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms