Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC15.34■□□□□ 0.05
Sox3P53784 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC15.34■□□□□ 0.05
Sox3P53784 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Sox3P53784 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC15.34■□□□□ 0.05
Sox3P53784 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Zkscan4-202ENSMUST00000225845 1506 ntBASIC15.34■□□□□ 0.05
Sox3P53784 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Gm15467-201ENSMUST00000120582 445 ntBASIC15.34■□□□□ 0.05
Sox3P53784 Gm10576-201ENSMUST00000191927 825 ntBASIC15.34■□□□□ 0.05
Sox3P53784 Gm10060-201ENSMUST00000212002 111 ntBASIC15.34■□□□□ 0.05
Sox3P53784 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Sox3P53784 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Sox3P53784 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
Sox3P53784 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Sox3P53784 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Sox3P53784 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC15.34■□□□□ 0.05
Sox3P53784 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Sox3P53784 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Sox3P53784 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Sox3P53784 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Sox3P53784 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
Sox3P53784 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.33■□□□□ 0.04
Sox3P53784 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
Sox3P53784 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.33■□□□□ 0.04
Sox3P53784 Auts2-212ENSMUST00000178555 309 ntBASIC15.33■□□□□ 0.04
Sox3P53784 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC15.33■□□□□ 0.04
Sox3P53784 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
Sox3P53784 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Sox3P53784 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC15.32■□□□□ 0.04
Sox3P53784 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC15.32■□□□□ 0.04
Sox3P53784 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Sox3P53784 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC15.32■□□□□ 0.04
Sox3P53784 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Sox3P53784 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.32■□□□□ 0.04
Sox3P53784 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Sox3P53784 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Sox3P53784 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.31■□□□□ 0.04
Sox3P53784 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sox3P53784 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Sox3P53784 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sox3P53784 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Sox3P53784 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Sox3P53784 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Sox3P53784 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms