Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Col18a1P39061 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col18a1P39061 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col18a1P39061 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col18a1P39061 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Gm9794-201ENSMUST00000202370 423 ntBASIC21.26■□□□□ 0.99
Col18a1P39061 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Col18a1P39061 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Col18a1P39061 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col18a1P39061 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC21.25■□□□□ 0.99
Col18a1P39061 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Gm28630-201ENSMUST00000187806 498 ntBASIC21.25■□□□□ 0.99
Col18a1P39061 Gm6473-201ENSMUST00000188572 1210 ntBASIC21.25■□□□□ 0.99
Col18a1P39061 Cdk7-205ENSMUST00000225990 1159 ntBASIC21.25■□□□□ 0.99
Col18a1P39061 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Col18a1P39061 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Col18a1P39061 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC21.25■□□□□ 0.99
Col18a1P39061 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Col18a1P39061 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC21.25■□□□□ 0.99
Col18a1P39061 Gm44855-201ENSMUST00000205725 362 ntBASIC21.25■□□□□ 0.99
Col18a1P39061 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col18a1P39061 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col18a1P39061 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col18a1P39061 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col18a1P39061 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col18a1P39061 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC21.24■□□□□ 0.99
Col18a1P39061 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col18a1P39061 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col18a1P39061 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Col18a1P39061 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
Col18a1P39061 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
Col18a1P39061 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col18a1P39061 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col18a1P39061 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col18a1P39061 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col18a1P39061 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col18a1P39061 AC132467.2-202ENSMUST00000227726 559 ntBASIC21.23■□□□□ 0.99
Col18a1P39061 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col18a1P39061 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col18a1P39061 Gm42934-201ENSMUST00000196920 1345 ntBASIC21.23■□□□□ 0.99
Col18a1P39061 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col18a1P39061 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
Col18a1P39061 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC21.23■□□□□ 0.99
Col18a1P39061 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col18a1P39061 AC135669.1-201ENSMUST00000213585 412 ntBASIC21.23■□□□□ 0.99
Col18a1P39061 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Col18a1P39061 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Col18a1P39061 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col18a1P39061 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col18a1P39061 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col18a1P39061 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC21.22■□□□□ 0.99
Col18a1P39061 Gm13015-201ENSMUST00000118674 204 ntBASIC21.22■□□□□ 0.99
Col18a1P39061 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC21.22■□□□□ 0.99
Col18a1P39061 Gm15487-201ENSMUST00000122373 465 ntBASIC21.22■□□□□ 0.99
Col18a1P39061 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC21.22■□□□□ 0.99
Col18a1P39061 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Col18a1P39061 Zcchc6-207ENSMUST00000225576 2499 ntBASIC21.22■□□□□ 0.99
Col18a1P39061 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col18a1P39061 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
Col18a1P39061 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col18a1P39061 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col18a1P39061 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Col18a1P39061 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Col18a1P39061 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Col18a1P39061 Gm27989-201ENSMUST00000184721 107 ntBASIC21.21■□□□□ 0.99
Col18a1P39061 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC21.21■□□□□ 0.99
Col18a1P39061 Gm43433-201ENSMUST00000196573 481 ntBASIC21.21■□□□□ 0.99
Col18a1P39061 Gm15222-202ENSMUST00000228667 1726 ntBASIC21.21■□□□□ 0.99
Col18a1P39061 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col18a1P39061 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Col18a1P39061 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col18a1P39061 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC21.21■□□□□ 0.99
Col18a1P39061 Gm16215-201ENSMUST00000161990 637 ntBASIC21.2■□□□□ 0.99
Col18a1P39061 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
Col18a1P39061 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC21.2■□□□□ 0.99
Col18a1P39061 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC21.2■□□□□ 0.98
Col18a1P39061 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col18a1P39061 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col18a1P39061 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col18a1P39061 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms