Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC16.84■□□□□ 0.29
Usp4P35123 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC16.84■□□□□ 0.29
Usp4P35123 Gm43353-201ENSMUST00000199224 1295 ntBASIC16.84■□□□□ 0.29
Usp4P35123 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC16.84■□□□□ 0.29
Usp4P35123 Gm18101-201ENSMUST00000215769 548 ntBASIC16.84■□□□□ 0.29
Usp4P35123 Gm18032-201ENSMUST00000222541 538 ntBASIC16.84■□□□□ 0.29
Usp4P35123 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Usp4P35123 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp4P35123 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.29
Usp4P35123 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Usp4P35123 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.83■□□□□ 0.29
Usp4P35123 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Usp4P35123 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.83■□□□□ 0.29
Usp4P35123 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Gm14464-201ENSMUST00000119658 1254 ntBASIC16.83■□□□□ 0.28
Usp4P35123 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
Usp4P35123 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC16.83■□□□□ 0.28
Usp4P35123 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC16.83■□□□□ 0.28
Usp4P35123 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Gm6190-201ENSMUST00000220683 1374 ntBASIC16.83■□□□□ 0.28
Usp4P35123 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Usp4P35123 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp4P35123 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 AC134329.2-201ENSMUST00000217897 428 ntBASIC16.82■□□□□ 0.28
Usp4P35123 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.82■□□□□ 0.28
Usp4P35123 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC16.82■□□□□ 0.28
Usp4P35123 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.82■□□□□ 0.28
Usp4P35123 Gm27528-202ENSMUST00000222916 2012 ntBASIC16.82■□□□□ 0.28
Usp4P35123 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp4P35123 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Usp4P35123 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp4P35123 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
Usp4P35123 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp4P35123 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Usp4P35123 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
Usp4P35123 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp4P35123 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 AC154855.1-201ENSMUST00000227353 1458 ntBASIC16.8■□□□□ 0.28
Usp4P35123 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Usp4P35123 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.8■□□□□ 0.28
Usp4P35123 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Usp4P35123 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Usp4P35123 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp4P35123 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Usp4P35123 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms