Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC15.2■□□□□ 0.02
Msx1P13297 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Msx1P13297 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Gm28265-201ENSMUST00000188201 2319 ntBASIC15.2■□□□□ 0.02
Msx1P13297 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Msx1P13297 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC15.19■□□□□ 0.02
Msx1P13297 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC15.19■□□□□ 0.02
Msx1P13297 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC15.19■□□□□ 0.02
Msx1P13297 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC15.19■□□□□ 0.02
Msx1P13297 Gm13312-201ENSMUST00000119631 718 ntBASIC15.19■□□□□ 0.02
Msx1P13297 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC15.19■□□□□ 0.02
Msx1P13297 Cmtm5-203ENSMUST00000227441 610 ntBASIC15.19■□□□□ 0.02
Msx1P13297 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Msx1P13297 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Msx1P13297 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC15.19■□□□□ 0.02
Msx1P13297 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Msx1P13297 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Msx1P13297 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Msx1P13297 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
Msx1P13297 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC15.18■□□□□ 0.02
Msx1P13297 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC15.18■□□□□ 0.02
Msx1P13297 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC15.18■□□□□ 0.02
Msx1P13297 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC15.18■□□□□ 0.02
Msx1P13297 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Msx1P13297 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Msx1P13297 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC15.18■□□□□ 0.02
Msx1P13297 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msx1P13297 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Msx1P13297 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC15.17■□□□□ 0.02
Msx1P13297 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 4930412F09Rik-201ENSMUST00000139006 1017 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC15.17■□□□□ 0.02
Msx1P13297 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Gm6296-201ENSMUST00000222599 943 ntBASIC15.17■□□□□ 0.02
Msx1P13297 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msx1P13297 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
Msx1P13297 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.16■□□□□ 0.02
Msx1P13297 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC15.16■□□□□ 0.02
Msx1P13297 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC15.16■□□□□ 0.02
Msx1P13297 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC15.16■□□□□ 0.02
Msx1P13297 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC15.16■□□□□ 0.02
Msx1P13297 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
Msx1P13297 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msx1P13297 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Msx1P13297 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms