Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC12.47□□□□□ -0.41
Hoxd3P09027 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Hoxd3P09027 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC12.47□□□□□ -0.41
Hoxd3P09027 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Hoxd3P09027 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC12.46□□□□□ -0.41
Hoxd3P09027 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Hoxd3P09027 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC12.46□□□□□ -0.41
Hoxd3P09027 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC12.46□□□□□ -0.41
Hoxd3P09027 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC12.46□□□□□ -0.41
Hoxd3P09027 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Hoxd3P09027 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Hoxd3P09027 Gm7507-201ENSMUST00000183053 1008 ntBASIC12.46□□□□□ -0.41
Hoxd3P09027 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC12.46□□□□□ -0.41
Hoxd3P09027 Gm37083-201ENSMUST00000195784 711 ntTSL 2 BASIC12.46□□□□□ -0.41
Hoxd3P09027 AC164629.2-201ENSMUST00000217916 270 ntBASIC12.46□□□□□ -0.41
Hoxd3P09027 AC133598.3-202ENSMUST00000224219 531 ntBASIC12.46□□□□□ -0.41
Hoxd3P09027 Mzt1-203ENSMUST00000227948 952 ntBASIC12.46□□□□□ -0.41
Hoxd3P09027 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC12.46□□□□□ -0.41
Hoxd3P09027 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
Hoxd3P09027 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Hoxd3P09027 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Hoxd3P09027 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC12.46□□□□□ -0.42
Hoxd3P09027 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Hoxd3P09027 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Hoxd3P09027 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Hoxd3P09027 Gm36858-201ENSMUST00000194501 2391 ntBASIC12.45□□□□□ -0.42
Hoxd3P09027 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Gm13884-201ENSMUST00000118103 829 ntBASIC12.45□□□□□ -0.42
Hoxd3P09027 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC12.45□□□□□ -0.42
Hoxd3P09027 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 AC127349.1-201ENSMUST00000224590 266 ntBASIC12.45□□□□□ -0.42
Hoxd3P09027 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Gm28265-201ENSMUST00000188201 2319 ntBASIC12.45□□□□□ -0.42
Hoxd3P09027 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Hoxd3P09027 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Gm32996-201ENSMUST00000199828 1447 ntBASIC12.45□□□□□ -0.42
Hoxd3P09027 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Hoxd3P09027 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Gm1818-201ENSMUST00000169406 1184 ntBASIC12.44□□□□□ -0.42
Hoxd3P09027 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Gm44044-201ENSMUST00000205178 1089 ntBASIC12.44□□□□□ -0.42
Hoxd3P09027 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hoxd3P09027 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC12.44□□□□□ -0.42
Hoxd3P09027 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms