Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Col3a1P08121 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC19.05■□□□□ 0.64
Col3a1P08121 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col3a1P08121 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Col3a1P08121 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col3a1P08121 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
Col3a1P08121 Best4-ps-201ENSMUST00000129783 1380 ntBASIC19.04■□□□□ 0.64
Col3a1P08121 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC19.04■□□□□ 0.64
Col3a1P08121 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 AC159295.1-201ENSMUST00000225326 940 ntBASIC19.04■□□□□ 0.64
Col3a1P08121 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
Col3a1P08121 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC19.04■□□□□ 0.64
Col3a1P08121 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC19.04■□□□□ 0.64
Col3a1P08121 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col3a1P08121 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Gm23935-201ENSMUST00000102303 57 ntBASIC19.03■□□□□ 0.64
Col3a1P08121 Gm24270-201ENSMUST00000102326 57 ntBASIC19.03■□□□□ 0.64
Col3a1P08121 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Col3a1P08121 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
Col3a1P08121 Gm24245-201ENSMUST00000157318 57 ntBASIC19.03■□□□□ 0.64
Col3a1P08121 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC19.03■□□□□ 0.64
Col3a1P08121 Mir3113-201ENSMUST00000175478 76 ntBASIC19.03■□□□□ 0.64
Col3a1P08121 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Col3a1P08121 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Col3a1P08121 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC19.03■□□□□ 0.64
Col3a1P08121 Gm7229-201ENSMUST00000214719 1007 ntBASIC19.03■□□□□ 0.64
Col3a1P08121 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Col3a1P08121 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Col3a1P08121 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC19.03■□□□□ 0.64
Col3a1P08121 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Col3a1P08121 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
Col3a1P08121 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col3a1P08121 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
Col3a1P08121 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col3a1P08121 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC19.02■□□□□ 0.63
Col3a1P08121 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC19.02■□□□□ 0.63
Col3a1P08121 AC225888.1-201ENSMUST00000227184 728 ntBASIC19.02■□□□□ 0.63
Col3a1P08121 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC19.02■□□□□ 0.63
Col3a1P08121 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col3a1P08121 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col3a1P08121 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Col3a1P08121 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Col3a1P08121 Gm38318-201ENSMUST00000195769 1706 ntBASIC19.01■□□□□ 0.63
Col3a1P08121 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Col3a1P08121 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Wnt10b-206ENSMUST00000228546 2709 ntBASIC19.01■□□□□ 0.63
Col3a1P08121 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
Col3a1P08121 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.01■□□□□ 0.63
Col3a1P08121 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Col3a1P08121 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC19.01■□□□□ 0.63
Col3a1P08121 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Col3a1P08121 Gm7063-201ENSMUST00000186840 981 ntBASIC19.01■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms