Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SNORA31.4-201ENST00000516049 129 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 AL022345.2-201ENST00000606307 135 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 uc_338.22-201ENST00000622722 187 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.33□□□□□ -2.2
VPS28Q9UK41 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.32□□□□□ -2.2
VPS28Q9UK41 Y_RNA.327-201ENST00000365201 102 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 Y_RNA.395-201ENST00000383945 109 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 RNU6-21P-201ENST00000384710 107 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 MIR452-201ENST00000385020 85 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 SNORA40.6-201ENST00000391153 128 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 AC005840.1-201ENST00000498412 377 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 AC114811.1-201ENST00000507207 168 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 TRMT112P2-201ENST00000512910 132 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 SNORA25.10-201ENST00000515926 124 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 SNORA31.2-201ENST00000516019 134 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 RNU6-947P-201ENST00000516264 106 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 RNU7-40P-201ENST00000516397 64 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 AC008269.2-201ENST00000561915 1105 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 DEFB117-201ENST00000602356 141 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 AC007485.1-201ENST00000616755 206 ntBASIC1.32□□□□□ -2.2
VPS28Q9UK41 Y_RNA.456-201ENST00000384232 111 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 MIR526A1-201ENST00000384897 85 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
VPS28Q9UK41 MIR1302-11-201ENST00000408051 138 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 MIR1302-9-201ENST00000408365 138 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 MIR1302-10-201ENST00000408734 138 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 RNU6-321P-201ENST00000410912 106 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 RNU6-1054P-201ENST00000411293 104 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.31□□□□□ -2.2
VPS28Q9UK41 RNU7-116P-201ENST00000516940 62 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 MIR3660-201ENST00000584845 100 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 FAM106DP-201ENST00000586416 501 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 BX284668.6-201ENST00000606899 438 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 MIR1302-2-201ENST00000607096 138 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 AC090971.5-201ENST00000621102 293 ntBASIC1.31□□□□□ -2.2
VPS28Q9UK41 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.31□□□□□ -2.2
VPS28Q9UK41 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
VPS28Q9UK41 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
VPS28Q9UK41 SNORD81.1-201ENST00000363064 77 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 Y_RNA.368-201ENST00000365547 113 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 RNU6-1323P-201ENST00000384025 107 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 Y_RNA.424-201ENST00000384063 103 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 RNU6-937P-201ENST00000384325 106 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 RNU6-939P-201ENST00000384634 107 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 MIR222-201ENST00000384992 110 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.3□□□□□ -2.2
VPS28Q9UK41 LINC01399-202ENST00000458450 244 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 HMGN1P7-201ENST00000491722 313 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 SNORA70.22-201ENST00000517160 124 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 MIR6078-201ENST00000611069 100 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 AC027335.2-201ENST00000624030 375 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.3□□□□□ -2.2
VPS28Q9UK41 AC091812.1-201ENST00000432235 1948 ntBASIC1.3□□□□□ -2.2
VPS28Q9UK41 MIR369-201ENST00000362155 70 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 Y_RNA.143-201ENST00000363520 106 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 Y_RNA.310-201ENST00000365063 113 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 Y_RNA.336-201ENST00000365307 109 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 SNORD42.2-201ENST00000365570 69 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 MIR522-201ENST00000385071 87 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 RNU4-30P-201ENST00000410245 143 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 MLLT10P1-201ENST00000418346 262 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 AC245047.7-201ENST00000440265 293 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 Y_RNA.639-201ENST00000458981 102 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 AC048334.1-201ENST00000477975 159 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 Y_RNA.714-201ENST00000517065 90 ntBASIC1.29□□□□□ -2.2
VPS28Q9UK41 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.29□□□□□ -2.2
VPS28Q9UK41 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
VPS28Q9UK41 Y_RNA.445-201ENST00000384168 102 ntBASIC1.28□□□□□ -2.2
VPS28Q9UK41 RNU6-131P-201ENST00000391144 107 ntBASIC1.28□□□□□ -2.2
VPS28Q9UK41 AL590004.1-201ENST00000405321 300 ntBASIC1.28□□□□□ -2.2
VPS28Q9UK41 MTND4P19-201ENST00000446659 478 ntBASIC1.28□□□□□ -2.2
VPS28Q9UK41 RPS29P29-201ENST00000456396 171 ntBASIC1.28□□□□□ -2.2
VPS28Q9UK41 SNORD111.1-201ENST00000516421 86 ntBASIC1.28□□□□□ -2.2
VPS28Q9UK41 POLR3GP1-201ENST00000594073 261 ntBASIC1.28□□□□□ -2.2
VPS28Q9UK41 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.28□□□□□ -2.2
VPS28Q9UK41 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.28□□□□□ -2.2
VPS28Q9UK41 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
VPS28Q9UK41 RNU6-1084P-201ENST00000362498 107 ntBASIC1.27□□□□□ -2.21
VPS28Q9UK41 Y_RNA.419-201ENST00000384041 102 ntBASIC1.27□□□□□ -2.21
VPS28Q9UK41 SNORA70.7-201ENST00000384159 133 ntBASIC1.27□□□□□ -2.21
VPS28Q9UK41 Y_RNA.509-201ENST00000384506 99 ntBASIC1.27□□□□□ -2.21
VPS28Q9UK41 RNU6-910P-201ENST00000390844 107 ntBASIC1.27□□□□□ -2.21
VPS28Q9UK41 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.27□□□□□ -2.21
VPS28Q9UK41 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.27□□□□□ -2.21
VPS28Q9UK41 RNA5SP404-201ENST00000517118 132 ntBASIC1.27□□□□□ -2.21
VPS28Q9UK41 SNORD113-5-201ENST00000607261 78 ntBASIC1.27□□□□□ -2.21
VPS28Q9UK41 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.26□□□□□ -2.21
VPS28Q9UK41 MIR337-201ENST00000362281 93 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 RNY1P10-201ENST00000363268 113 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 snoU2-30.1-201ENST00000365012 70 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 MIR1298-201ENST00000408783 112 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 SNRPGP10-201ENST00000432323 225 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 POLR2KP2-201ENST00000438155 177 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 HMGN2P32-201ENST00000444648 269 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 HMGN1P10-201ENST00000474557 553 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 SEPT14P8-201ENST00000508026 178 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 SNORD45.4-201ENST00000516629 73 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 MIR4781-201ENST00000585250 76 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 AP003357.1-201ENST00000604497 148 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 AL050343.2-201ENST00000607338 280 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms