Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AP000942.4-201ENST00000604811 241 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.21□□□□□ -2.06
NUP88Q99567 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.21□□□□□ -2.06
NUP88Q99567 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
NUP88Q99567 UBE2WP1-201ENST00000362030 340 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 SNORA1B-201ENST00000362535 133 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 RNU1-17P-201ENST00000363022 152 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 Y_RNA.140-201ENST00000363474 103 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 Y_RNA.293-201ENST00000364908 93 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 Y_RNA.307-201ENST00000365022 117 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 RNU6-1080P-201ENST00000383982 107 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 RNU6-1323P-201ENST00000384025 107 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 Y_RNA.518-201ENST00000384552 113 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 RNU6-440P-201ENST00000390882 105 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 Y_RNA.618-201ENST00000410949 107 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 AC009310.1-201ENST00000414414 451 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.2□□□□□ -2.06
NUP88Q99567 HMGN2P19-201ENST00000425149 265 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 RPS27P1-201ENST00000450552 247 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 RPS29P11-201ENST00000496507 171 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.2□□□□□ -2.06
NUP88Q99567 Y_RNA.673-201ENST00000516306 88 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 RNU7-115P-201ENST00000516433 55 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 MIR3935-201ENST00000583472 104 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 AC091178.2-201ENST00000584401 117 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 AL929325.1-201ENST00000603096 117 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 AP003357.1-201ENST00000604497 148 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 AC010900.2-201ENST00000604508 210 ntBASIC2.2□□□□□ -2.06
NUP88Q99567 AC100821.1-201ENST00000523153 2479 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.19□□□□□ -2.06
NUP88Q99567 RNU6-1205P-201ENST00000363625 106 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 Y_RNA.416-201ENST00000384014 113 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 MIR9-3-201ENST00000385084 90 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 MIR676-201ENST00000390702 67 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 U8.19-201ENST00000459095 133 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 AL049830.1-201ENST00000468034 425 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 RNA5SP182-201ENST00000516064 82 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 RNA5SP458-201ENST00000516188 119 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 MIR3128-201ENST00000581957 66 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 MIR8081-201ENST00000611533 95 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 snoU18.1-201ENST00000629629 71 ntBASIC2.19□□□□□ -2.06
NUP88Q99567 RNU6-414P-201ENST00000363705 104 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 Y_RNA.217-201ENST00000364214 105 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 SNORA20.1-201ENST00000364790 130 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 Y_RNA.447-201ENST00000384184 113 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 SNORA36B-201ENST00000410438 131 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 AL356379.1-201ENST00000414105 126 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.18□□□□□ -2.06
NUP88Q99567 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.18□□□□□ -2.06
NUP88Q99567 Y_RNA.641-201ENST00000459414 105 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 AC127455.1-201ENST00000565496 145 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 SNORA28-201ENST00000606769 126 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 AL078604.3-201ENST00000615580 211 ntBASIC2.18□□□□□ -2.06
NUP88Q99567 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
NUP88Q99567 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
NUP88Q99567 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
NUP88Q99567 Y_RNA.65-201ENST00000362846 100 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 Y_RNA.188-201ENST00000363952 111 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 Y_RNA.562-201ENST00000384695 113 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
NUP88Q99567 AL034345.1-201ENST00000407768 123 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 HMGN2P38-201ENST00000423806 265 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 Y_RNA.637-201ENST00000459424 114 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.17□□□□□ -2.06
NUP88Q99567 MIR4713-201ENST00000582691 75 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 BX284668.6-201ENST00000606899 438 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 AC013791.1-201ENST00000616619 62 ntBASIC2.17□□□□□ -2.06
NUP88Q99567 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.17□□□□□ -2.06
NUP88Q99567 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
NUP88Q99567 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
NUP88Q99567 RNU6-211P-201ENST00000384047 107 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 RNU6-439P-201ENST00000384188 106 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 Y_RNA.478-201ENST00000384358 107 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 Y_RNA.489-201ENST00000384410 101 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
NUP88Q99567 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.16□□□□□ -2.06
NUP88Q99567 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.16□□□□□ -2.06
NUP88Q99567 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.16□□□□□ -2.06
NUP88Q99567 SNORA31.10-201ENST00000516482 106 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 RNU6-1271P-201ENST00000517049 105 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 MIR5692C2-201ENST00000577959 77 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 AC005357.1-201ENST00000588399 301 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.16□□□□□ -2.06
NUP88Q99567 AL008718.3-201ENST00000610217 321 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 AL627230.6-201ENST00000611129 280 ntBASIC2.16□□□□□ -2.06
NUP88Q99567 AL359851.1-201ENST00000569460 4997 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 Y_RNA.60-201ENST00000362831 98 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 SNORD68-201ENST00000363214 84 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 SUMO2P12-201ENST00000405924 140 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 MLLT10P1-201ENST00000418346 262 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 FTH1P12-201ENST00000432137 551 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 RNA5SP233-201ENST00000459153 113 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 RNU6-437P-201ENST00000459408 95 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 AL358944.1-201ENST00000528537 144 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.15□□□□□ -2.07
NUP88Q99567 JPX_2.1-201ENST00000614161 69 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 AC084768.2-201ENST00000622736 221 ntBASIC2.15□□□□□ -2.07
NUP88Q99567 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms